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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0307599 |
| Transcript ID | Lj0g3v0307599.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Rhamnogalacturonate lyase [Medicago truncatula] gi|357517173|ref|XP_003628875.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | – | – | |
| ProSiteProfiles | 1 | 30 | 30 | 7 | – | |
| Phobius | 1 | 10 | 10 | – | – | |
| SignalP | 1 | 31 | 31 | – | – | |
| PANTHER | 10 | 648 | 639 | 0 | – | |
| PANTHER | 10 | 648 | 639 | 0 | – | |
| Phobius | 11 | 26 | 16 | – | – | |
| TMHMM | 12 | 31 | 20 | – | – | |
| Phobius | 27 | 30 | 4 | – | – | |
| Phobius | 31 | 648 | 618 | – | – | |
| CDD | 59 | 342 | 284 | 2.94E-71 | – | |
| SUPERFAMILY | 59 | 113 | 55 | 5.65E-09 | ||
| Pfam | 62 | 248 | 187 | 2.20E-75 | ||
| SUPERFAMILY | 144 | 344 | 201 | 5.65E-09 | ||
| Gene3D | 377 | 482 | 106 | 1.10E-21 | ||
| SUPERFAMILY | 377 | 392 | 16 | 3.33E-10 | ||
| CDD | 380 | 480 | 101 | 1.53E-33 | ||
| Pfam | 403 | 476 | 74 | 1.30E-28 | ||
| SUPERFAMILY | 424 | 478 | 55 | 3.33E-10 | ||
| Gene3D | 487 | 648 | 162 | 2.20E-32 | ||
| SUPERFAMILY | 487 | 648 | 162 | 7.23E-30 | ||
| Pfam | 490 | 648 | 159 | 3.70E-37 | ||
| CDD | 492 | 648 | 157 | 1.68E-33 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of Lj0g3v0307599.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0307599.2, powered by CORGI.
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