Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0273000 |
| Transcript ID | LotjaGi1g1v0273000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription elongation factor SPT5; TAIR: AT4G08350.1 global transcription factor group A2; Swiss-Prot: sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1; TrEMBL-Plants: tr|I1JYX6|I1JYX6_SOYBN Transcription elongation factor SPT5; Found in the gene: LotjaGi1g1v0273000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66918194..66926070) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAGTCCATAACTCAGCTATTTTGATGGGATAAAGTATAAAATCCCCCCGGATGTTTCAAAAAAAAAAAATATAAAA TCCCCCCTAAAGTCATCAGCTCTCTTCATTAGACATTAGGGATACCAAAAATAAATAAATATAGTTGAACAGGAATCCAC ATCCTCGATTTACAGTTGATACAATTTTATCTTGTTAGTTATTTTTGATTTAATTTAAATTTACGGTCTCCGTTAGCATT GGTGTTACATAAATCTCTCGAAGCACAACAGAGACTAGCACTCACATCACAAGCGCTAGGGTTTGCAGTTTGCATCATGG CTCGCGGTGGAAAACACGAGGACGATTACGAGGATGAGTACGAGGAGGAGGACGATGAGCCGGTCGCCGATTACGACGAC GATGCGGCGGAGGATGAAGATTACGACGTGCACGGCAAAGGAGGCAGCGGCGGCGGCAGGAAGCGTGGTAGATCTAGCTT CATCGCTGATGACGCCGAGGAGGATGAGGATGAAGAGGAAGAGGATGATGAGGATGAGGATTACCGCGGCGGCGGCGGCG GCGGCGGCCGAGCGAAACGGAAGCGCAACAACAAGGCTTCCGCGTCGGATTTCTTCGATGAAGAGGCCGCGGTTGATTCC GATGAGGAGGAGGAAGAGGAAGAAGGCGAAGACGGTGAGTTTCTTCTTCCCTTTGTATTTCATTCTCTTAGTTTCTGTTG CGATTAGATTGGAGGAAGGGGAATCAATTCAATTAGGGAAAGAAATTTGGGTTGGAATTTGGAATTTAGAATTTAGGGTT ATCAGTTCAATAGTGCTTGTTTGTTAAAATTTGTTTTCTCTGGAAAAATGCATGTTTGGTGAAGGAATTTTTTTAGCTTT TTTAGCATCTGTCATCCAGAAGTGATTTTTGGTTTTGATTCTGGTATCTGAAATCTGAGGCTAACAGACTGTGAGTGAAT ATGGCTCCATTGCATTTGCATGGGATCTTGGAGTTAAACCCTGTTCGTCTTACCTTCTGCAAATTCCAATTGTTTTATGT GATTAGCTAAACTATGATAGATTGAGGGTATACACTAGTAGTTTTCGGTGGTGTTGGTGCTGTTTTCAGAGCGTTTATTT GATAGTAGGCAGTACAGTTGATAATTGTGTCCTCTGATTGCCCTATCTTCTTATAAGAAGTTGAATGATATTGTTATCAA GTGACTGGAATCGTAGTTTTTGCGAGCCTTTTAACATGTATGAATGCTTTGTTGTGATGCTGGATTTTATATGAATTCTA GATAAGCATTGGACTTCTTGAGTTTCTGCTGTTATGCACATGGTTGGTCGATTTTTGTAAAATTGTTGTGTTCCAGGCTC TCTGTTGTATTGTATATATAGTACGCCAATTATATGTGTAGATAAGCTTACTACTGTCTGAAATATGCAGACTTCATTGT TGACGGTGGACCTGATCTGCAAGAGGAAGAGCATGTTGGAAGGGTGCGAAATACTCGTATGCTGCCACCACACCATGAAG ATCATGAAGATCTTGAAGCTATGGCACAAAGAATTCATGAAAGATATGGAAAGCAGCGTATGCCAGAGTATGATGAAGAA ACTACAGATGTAGAACAACAAGCTCTTTTGCCATCTGTGAGAGATCCCAAGCTGTGGATGGTCAAATGTTTGGTATGATT CTATCCATTTGTGATTATTTTCTTGTTCTGGCGAAGATATTAAAGCATGATATATATTCTTTGGTTTTTGTTCAACAGAT TGGTCGTGAACGAGAAACAGCTGTTTGTCTCATGCAAAAGTACATAGATAAGGGCTCCGAGTTGCAAATTAGATCAGCTA TTGCTCTTGATCATTTAAAAAATTATATATATGTGGAAGCAGATAAAGAAGCCCATGTTAGAGAGGTATTGTCATGTGAA ATATCTCTTGTATATCATGCATATATTTATGGATGAAATTTTGATTTTTCTTTAATATTTTTGCTTATGTTTCAGGCTTG CAAAGGTCTCCGCAATATATATGGCCAAAAAATAACACTTGTTCCTATCAGAGAAATGACTGATGTGTTGTCAGTTGAAA GCAAAGCTATTGATCTTGCGAGAGATACTTGGGTCAGAATGAAGATTGGGACATATAAAGGAGACCTTGCCAAAGTGTGC ATCACATTATACGAAACTTGTGATTCCTTTCTTTTTACTTTCTTTACTTACCATCATATATCTCTTCTATAGGTGGTGGA TGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCAAGGGTAGACTTACAGGCCCTCGCAGACAAATTGGTAT GAAATTTTTCAGTGTCTTGCTAAACTCATGCTTTTTATTTGTCAAATCTGATGTTTTAATAACTTGAGTACCTATTTTTG GGCAAAACTCATTTATCATGCAGGAAGGTAAGGAAGTTGTGAAAAAGAAGGCATTTATTCCTCCTCCTCGTTTTATGAAT GTAGATGAAGCTAGGTACTTGGGATTCTCTCCTTTATATTACTGAATGTTCTCTATTTCTTGAAAACTTCTTCAGTTCCT TGTCTGACTGAAGAATTTATGCTTTTTATCAGGGAACTACATATCCGTGTGGAGAATAAAAAAGATTCCTATGGGGAACG ATATGATGCCATTGGAGGCATGATGTTCAAAGATGGATTTTTATACAAAATAGTATCAATCAAATCAATAAGTGCTCAGA ACATCAACCCTACTTTTGATGAACTTGACAAATTTCGGAAACCCGGAGATGGTGGAGATGGTGATGTAGCTAGTCTTTCA ACTTTGTTTGCAAACAGAAAGAAAGGACATTTTATGAAAGGTGATGCTGTCATTGTCGTCAAGGGCGATTTAAAGAACTT GAAGGGATGGGTGGAGAAAGTGGATGAAGATAATGTTCATATAAAACCAGAACTTAAGGATCTCCCGGTATGTGTAAATT TATGATTTACTATATTTTCTTCCCTGGATAATTTGATAGTTTTGCATGATGATGATTAGCAAAAGGGCAGCTCCCACCTT GGTGGCATCCAAGGAAGGCTTACCTTGCATTTGTGAGAGGCTGATTTATGACTTGAAATTATGACCTCGTTGTTATATGG AAGAAATGATAACTGCTGCTCCAATTCTTATCTTGATGTTTATGTTTAGTAATAAATTGCTTACATGAGGATCTAATTAT CTTCTTTTCCCCTTTTTTCAGAAAACTCTTGCATTTAATGAAAAGGAACTTTGTAAGTATTTTGAACCTGGAAATCATGT TAAAGTTGTATCCGGTGCTCAAGAAGGTGCTACTGGCATGGTAGTAAAGGTGGATCAACACGTGTTAATATTAATATCAG ACACGACAAAGGAGCACGTGAGTAGTCCCTTCATAGAGTTACTGAAAGACTTGTGAATTTCTATTATATTTAATGCATAG ATGACAAAAAATATCCTTTCTTCAGATCCGTGTTTTCGCAGATGATGTTGTCGAGAGTTCTGAAGTGACCACCGGAATTA CAAAAATTGGGGACTATGAACTTCGTGATCTTGTAGAGCTTGAGTAAGATTTTCTTGGGCTGAAATATGCATATCGCTTT GCCTCTGTATTCTATAATTCAAACTTTTCTCACTTCTAAATAAACTTCGTGCAGTAATTCGAACTTTGGTGTGATAATAC GTGTAGAAAGCGAGGCAGTTCAGGTTAGTATCTTAGTAAATGAACATTTTAAGATGATTTTTGTTAAAATCAAAAGCTTT GTCATCGTATTTATTTCTGTTACTGTTTTTTAGGTTCTTAAAGGGGTTCCTGACAGACCTGAAGTTGTGCTTGTTAAATT AAGAGAGATCAAGAGGAAAATAGATAGGAAAATGAGTGTGCAGGATAAGCTGAAGAATACAGTATCGTCAAAGGACGTTG TGCGGATTGTTGAGGGTCCCTGTAGAGTGAGATTCTGACTTTGGCTAGATTTATTTCTTGGAAGTTGATATTCAGATTTT TAACCTTTTTTTTATTAGGGCAAACAAGGTCCTGTGGAGCACATATATAGAAGAATCTTGTTTATCTTTGATCGTCATCA TCTTGAACATGCTGGCTTTATATGTGCTAAGGCCCAATCATGTGTAGTTGTGGGAGGTTCCCGTTCCAGTGGTGACAGAA ATGTACCCAGTTTTCCTATTTTTATTCTTATGATATTTTGGTCTGAAGTTTTAATTTTATTCTCGTGTTAGCATTTTCCT CAATTTATTTCTCTACTCTCTAGGGTGATGCCTACTCAAAACTCTCGGCCTTCAGAACTCCACCTCCTATTCCAGATTCC CCGAAGAGGTTTCCTCGAGGAGGGCGAGGATTTGATTGTATGTTTAAATCTTTCGTGTATTCAATGCCGGAACATTAAAT AACTGTCATTTTGATATACCTTTTTATAAAAACGGTGACTGATGTTGATTTATTTGGATGTGCTGTATAGCTGGAGGGAG GCATAGGGGCGGAAGGGGGGGACATGATGGTTTGTCAGGTACAACAGTCAAAGTACGCCAGGGTCCCTATAAAGGTTATC GTGGGCGTGTTATAGAGGTTAAAGGCGCAATGGTTCGGGTTGAATTAGAATCCCAAATGAAGGTTGTAACAGGTAAATTT TTTAATTTGGGCATACACTTTAGCTGCGTGAGATTTTGTAGTACATGGTCTCTGACTTGGTTGTTTGCAGTTGATCGCAA CCATATATCTGACAATGTGGCTGTAACCCCATACCGGTAATTTATATATACTTATAGTTTGTGATTTGTTGTCCGCATCA GAAGATATTCAACCATCTGACTCTTATGTTTTCTGCCAGTGATACAACTCGATATGGGATGGGAAGTGAAACCCCAATGC ATCCATCTCGAACTCCCTTACATCCATATATGACCCCTATGAGAGATCCTGGAGGTTTGTTTGATTTATTTTATAGGGTT GATACTTGAGCCTATTATTTGATTGGTAGACATGACTGCTAATATTTCTCAAATGTACTGCTATTTGTAGCAACACCTAT TCATGATGGAATGAGGACGCCAATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGTTTGTCCAAA TGTCATCCATCCTTCCTGAGCTAATATTCACTTCTGTGGTTTATACCCCCCACAATCCAGTTTTCTGTTTTAGTAAAAGG ACTTTTCCTTCTGGTTTTCTTTGCTGAACCTTCTGTTAAGATTTCTTATCCTGAACCGTAAAGGGAATTAGTTTAAAATC TAAGTCATCTTCTTTCTAATAGATGTCAATGTCCTAAATGGAAGATAACTACAGCAAGAGAGTTATATGGAATTTGGTTG TTAAAAGAAATATTATCAGTTTGTAGTCTGCAACGCTTAGTAATGGAGTAATGTGTTGATGTGATTTATGAATTCTGACG TTGAGCTTATAATCAGGGATAACTGGGAAGATGGAAATCCGGGCTCTTGGGGAGCCAGTCCACAGTACCAGGTCAGAAGT TTTATCAAACTTGATCCTCTGCAACAGTAATTTATATGAAGAACCATACTGATCTCTTCTTTTTAATCTTTTCAGCCAGG AAGTCCTCCTTCCCGGCCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCAAGCACTCCTGGTGGCAATTATAGTGAAG CTGGGACTCCAAGGGACAATTCTGCCTACGGTAGAACCATTTCTTACTTGCCCTTTGATATCAATAGTATATTCAGTTTT AGTTCTTATACTAATATTCTATTGGGGGTTGGGTGTTGAATTGCAGCCAATGCTCCAAGCCCATATTTACCGTCAACACC TGGTGGACAGCCTATGACACCAAATTCTGCATCTTATCTTCCTGGCACCCCGGGAGGACAGCCTATGACTCCAGGAACTG GTGGTCTGGACATGATGTCCCCAGTTTTAGGTAAGTTACTGTTCTCTGTCAATCTATGACAGAGATTTTGTATCTACAAT ATTTGGTTTTTGTGGCATGTCTATTTGGTTATATTATGCTGCAATTTGATGTACCTAATTCTCTTCATTTATGATAGCAT GTAGCTTAAAACAAACATATTCTCTGTTATGTACTGCTAGTGGTAGGCTTAAAACAAACATATCATAGATTGATGTTGGT CGTCAAATATTCTATACTATGGTGCATTTAAATAAGAAGTTTATTAGCGCTCTGCCCAATTAGTTCTTAAATCGTGAATG GGGGAAGAGTCATTTTTGGAATTGTGAATCGTATCGTATTATGTATTGTAAGATACATACACACATAAAATCAAGTTATA AATTGAAAGATAAGTGACATACAGAAATATAACTTGGCAAACCAAATATGCTCTGCACATAATATTTGGTTTGCCACTTG TTTTTTTTTTCTCATTTGAGTGCAGGCACAAGCCATACATGGTCAAGGATGGAGTGGTTAATCTAGTCCTCAAACATCAT ATCTCGTCCTAATATCAATTATTGCTGATCTATTAGGACGGTTTTAATTCAAACAAATATATTGCCTTATGTGCCTCATG TTGCAAAGTCCCGCAATAATCCCGATTAGCAATTTGATTACCTTTGTATCTTTGGCAGACCTTTAAGTAACCTTGATTTT GCATAGTTAAGGGGAGATTGCAACATTATTTACCGAGCATATTCCTGAATATGTTACGTGAAATTGGATCATTGGAAATA TTTGAAAAAGGACTATTTCTTTTACATTAGTCTGCCAACTTAATGCCTTGATTTCATTGTAGGTGGGGACAACGAAGGGC CGTGGTTTATACCAGATATATTAGTCAATGTACACAGGGGTGGAGAAGAATCTATTGGAGTTATAAAAGAGATTCTTCAG GTATGTTTACTAAGAAGCGCTTGTATATGTTTGTTTGATGCTTTTGGAGACATCATGCCTGATTTTTTGCTATTTTGGGA AGGGGGGGTTATATATGCTTTATTTTAATGCATGAAGCTAACTTCTCTCTTATTTACTCATTCAATTTGTTTGTTTCTTC AGGATGGCTCTTGCAGGGTAGCACTTGGGCCTAGTGGTAATGGTGAAACATTAACAGTCCTTCCTACTGAAATGGAAGCT GTAGTACCGAGGAAATCGGACAAAATTAAAATTATGGGTGGGGCATTGCGTGGTGCCACCGGCAAGTTGATTGGAGTAGA TGGTACTGATGGTATTGTAAAGGTAGACGACACATTGGACGTTAAGATTTTAGACTTGGTTATTTTAGCCAAATTAGCTC AACCTTGATAAAGCTTCTTGTGGAGAAATTGGTCAATGCATATATTTATTCTCATCTGTTGGGAGCTCTTTTGCGTTATT ATGTCTTTAATAAGTTTCATCGCTCCCCCCAGAACTTGATTAAGTGAAGTTGCATGCATGAGACCCAACTGCAGACACTG TTTTCTCTTCAAATTAAGAGCGATTAAAATTATTGCTTCCCTTACAAATGGGTGACCTAGAACGGGTGAAACCTTTAGGT ATCACTAATGTAAAGATGTTGTGTTGGGTTTTTTAGGGCTTGAGTTTGGTTTCCTTTCCAAATTTAGTTTGAAACTGGCA TGTTGCTGAGATAGGTGTAAAATTTGGGATTTTAGGGGGAAATACACAATTGCGTTGAATTAAATATGAAAATTGAAAAG TGGAATTCTTTCAAAAAAAAATGAAAAGTGCAATTAAGTCTTGGTAATATCAATTCGCCCCAAAAAAATGCATCTATTGA GATACCATAATCGACAACTTGAGAATTCAACATGTTTGTCTAGACATAAAATTAGAAGATACATATAAGTATCTTTTTAA ATACGTTTACACATCCACTTCTCAGAATTAATGGAGG
CDS sequence (LotjaGi1g1v0273000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGCGGTGGAAAACACGAGGACGATTACGAGGATGAGTACGAGGAGGAGGACGATGAGCCGGTCGCCGATTACGA CGACGATGCGGCGGAGGATGAAGATTACGACGTGCACGGCAAAGGAGGCAGCGGCGGCGGCAGGAAGCGTGGTAGATCTA GCTTCATCGCTGATGACGCCGAGGAGGATGAGGATGAAGAGGAAGAGGATGATGAGGATGAGGATTACCGCGGCGGCGGC GGCGGCGGCGGCCGAGCGAAACGGAAGCGCAACAACAAGGCTTCCGCGTCGGATTTCTTCGATGAAGAGGCCGCGGTTGA TTCCGATGAGGAGGAGGAAGAGGAAGAAGGCGAAGACGACTTCATTGTTGACGGTGGACCTGATCTGCAAGAGGAAGAGC ATGTTGGAAGGGTGCGAAATACTCGTATGCTGCCACCACACCATGAAGATCATGAAGATCTTGAAGCTATGGCACAAAGA ATTCATGAAAGATATGGAAAGCAGCGTATGCCAGAGTATGATGAAGAAACTACAGATGTAGAACAACAAGCTCTTTTGCC ATCTGTGAGAGATCCCAAGCTGTGGATGGTCAAATGTTTGATTGGTCGTGAACGAGAAACAGCTGTTTGTCTCATGCAAA AGTACATAGATAAGGGCTCCGAGTTGCAAATTAGATCAGCTATTGCTCTTGATCATTTAAAAAATTATATATATGTGGAA GCAGATAAAGAAGCCCATGTTAGAGAGGCTTGCAAAGGTCTCCGCAATATATATGGCCAAAAAATAACACTTGTTCCTAT CAGAGAAATGACTGATGTGTTGTCAGTTGAAAGCAAAGCTATTGATCTTGCGAGAGATACTTGGGTCAGAATGAAGATTG GGACATATAAAGGAGACCTTGCCAAAGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCAAGG GTAGACTTACAGGCCCTCGCAGACAAATTGGAAGGTAAGGAAGTTGTGAAAAAGAAGGCATTTATTCCTCCTCCTCGTTT TATGAATGTAGATGAAGCTAGGGAACTACATATCCGTGTGGAGAATAAAAAAGATTCCTATGGGGAACGATATGATGCCA TTGGAGGCATGATGTTCAAAGATGGATTTTTATACAAAATAGTATCAATCAAATCAATAAGTGCTCAGAACATCAACCCT ACTTTTGATGAACTTGACAAATTTCGGAAACCCGGAGATGGTGGAGATGGTGATGTAGCTAGTCTTTCAACTTTGTTTGC AAACAGAAAGAAAGGACATTTTATGAAAGGTGATGCTGTCATTGTCGTCAAGGGCGATTTAAAGAACTTGAAGGGATGGG TGGAGAAAGTGGATGAAGATAATGTTCATATAAAACCAGAACTTAAGGATCTCCCGAAAACTCTTGCATTTAATGAAAAG GAACTTTGTAAGTATTTTGAACCTGGAAATCATGTTAAAGTTGTATCCGGTGCTCAAGAAGGTGCTACTGGCATGGTAGT AAAGGTGGATCAACACGTGTTAATATTAATATCAGACACGACAAAGGAGCACATCCGTGTTTTCGCAGATGATGTTGTCG AGAGTTCTGAAGTGACCACCGGAATTACAAAAATTGGGGACTATGAACTTCGTGATCTTGTAGAGCTTGATAATTCGAAC TTTGGTGTGATAATACGTGTAGAAAGCGAGGCAGTTCAGGTTCTTAAAGGGGTTCCTGACAGACCTGAAGTTGTGCTTGT TAAATTAAGAGAGATCAAGAGGAAAATAGATAGGAAAATGAGTGTGCAGGATAAGCTGAAGAATACAGTATCGTCAAAGG ACGTTGTGCGGATTGTTGAGGGTCCCTGTAGAGGCAAACAAGGTCCTGTGGAGCACATATATAGAAGAATCTTGTTTATC TTTGATCGTCATCATCTTGAACATGCTGGCTTTATATGTGCTAAGGCCCAATCATGTGTAGTTGTGGGAGGTTCCCGTTC CAGTGGTGACAGAAATGGTGATGCCTACTCAAAACTCTCGGCCTTCAGAACTCCACCTCCTATTCCAGATTCCCCGAAGA GGTTTCCTCGAGGAGGGCGAGGATTTGATTCTGGAGGGAGGCATAGGGGCGGAAGGGGGGGACATGATGGTTTGTCAGGT ACAACAGTCAAAGTACGCCAGGGTCCCTATAAAGGTTATCGTGGGCGTGTTATAGAGGTTAAAGGCGCAATGGTTCGGGT TGAATTAGAATCCCAAATGAAGGTTGTAACAGTTGATCGCAACCATATATCTGACAATGTGGCTGTAACCCCATACCGTG ATACAACTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCATCTCGAACTCCCTTACATCCATATATGACCCCTATG AGAGATCCTGGAGCAACACCTATTCATGATGGAATGAGGACGCCAATGCGTGACCGAGCATGGAATCCTTATACACCAAT GAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCGGGCTCTTGGGGAGCCAGTCCACAGTACCAGCCAGGAAGTCCTC CTTCCCGGCCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCAAGCACTCCTGGTGGCAATTATAGTGAAGCTGGGACT CCAAGGGACAATTCTGCCTACGCCAATGCTCCAAGCCCATATTTACCGTCAACACCTGGTGGACAGCCTATGACACCAAA TTCTGCATCTTATCTTCCTGGCACCCCGGGAGGACAGCCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAG TTTTAGGTGGGGACAACGAAGGGCCGTGGTTTATACCAGATATATTAGTCAATGTACACAGGGGTGGAGAAGAATCTATT GGAGTTATAAAAGAGATTCTTCAGGATGGCTCTTGCAGGGTAGCACTTGGGCCTAGTGGTAATGGTGAAACATTAACAGT CCTTCCTACTGAAATGGAAGCTGTAGTACCGAGGAAATCGGACAAAATTAAAATTATGGGTGGGGCATTGCGTGGTGCCA CCGGCAAGTTGATTGGAGTAGATGGTACTGATGGTATTGTAAAGGTAGACGACACATTGGACGTTAAGATTTTAGACTTG GTTATTTTAGCCAAATTAGCTCAACCTTGA
Protein sequence (LotjaGi1g1v0273000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARGGKHEDDYEDEYEEEDDEPVADYDDDAAEDEDYDVHGKGGSGGGRKRGRSSFIADDAEEDEDEEEEDDEDEDYRGGG GGGGRAKRKRNNKASASDFFDEEAAVDSDEEEEEEEGEDDFIVDGGPDLQEEEHVGRVRNTRMLPPHHEDHEDLEAMAQR IHERYGKQRMPEYDEETTDVEQQALLPSVRDPKLWMVKCLIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVE ADKEAHVREACKGLRNIYGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPR VDLQALADKLEGKEVVKKKAFIPPPRFMNVDEARELHIRVENKKDSYGERYDAIGGMMFKDGFLYKIVSIKSISAQNINP TFDELDKFRKPGDGGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEDNVHIKPELKDLPKTLAFNEK ELCKYFEPGNHVKVVSGAQEGATGMVVKVDQHVLILISDTTKEHIRVFADDVVESSEVTTGITKIGDYELRDLVELDNSN FGVIIRVESEAVQVLKGVPDRPEVVLVKLREIKRKIDRKMSVQDKLKNTVSSKDVVRIVEGPCRGKQGPVEHIYRRILFI FDRHHLEHAGFICAKAQSCVVVGGSRSSGDRNGDAYSKLSAFRTPPPIPDSPKRFPRGGRGFDSGGRHRGGRGGHDGLSG TTVKVRQGPYKGYRGRVIEVKGAMVRVELESQMKVVTVDRNHISDNVAVTPYRDTTRYGMGSETPMHPSRTPLHPYMTPM RDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGT PRDNSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWFIPDILVNVHRGGEESI GVIKEILQDGSCRVALGPSGNGETLTVLPTEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDL VILAKLAQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 81 | 81 | 0.81 | ||
| MobiDBLite | 1 | 134 | 134 | - | – | |
| MobiDBLite | 11 | 34 | 24 | - | – | |
| PANTHER | 32 | 1047 | 1016 | 0.0 | – | |
| PANTHER | 32 | 1047 | 1016 | 0.0 | ||
| PIRSF | 57 | 1049 | 993 | 0.0 | ||
| MobiDBLite | 58 | 76 | 19 | - | – | |
| Pfam | 99 | 187 | 89 | 1.4E-11 | ||
| MobiDBLite | 102 | 126 | 25 | - | – | |
| Gene3D | 187 | 284 | 98 | 1.7E-35 | ||
| SMART | 191 | 277 | 87 | 3.8E-15 | ||
| CDD | 193 | 275 | 83 | 1.97628E-39 | ||
| Pfam | 193 | 274 | 82 | 4.3E-26 | ||
| SMART | 282 | 309 | 28 | 3.6 | ||
| Gene3D | 285 | 325 | 41 | 2.6E-7 | ||
| CDD | 286 | 323 | 38 | 7.32159E-16 | ||
| SUPERFAMILY | 426 | 465 | 40 | 4.73E-5 | ||
| Gene3D | 428 | 485 | 58 | 3.3E-18 | ||
| SMART | 433 | 460 | 28 | 7.2E-4 | ||
| CDD | 434 | 484 | 51 | 2.38063E-15 | ||
| ProSitePatterns | 437 | 454 | 18 | - | ||
| SUPERFAMILY | 477 | 536 | 60 | 4.73E-17 | ||
| CDD | 485 | 535 | 51 | 9.14911E-20 | ||
| SMART | 485 | 512 | 28 | 1.1E-5 | ||
| Gene3D | 487 | 537 | 51 | 2.1E-19 | ||
| Pfam | 488 | 513 | 26 | 7.4E-11 | ||
| SMART | 609 | 636 | 28 | 0.18 | ||
| CDD | 613 | 655 | 43 | 4.04568E-15 | ||
| MobiDBLite | 667 | 726 | 60 | - | – | |
| MobiDBLite | 696 | 714 | 19 | - | – | |
| Gene3D | 698 | 766 | 69 | 4.8E-20 | ||
| SMART | 716 | 743 | 28 | 1.5 | ||
| CDD | 720 | 764 | 45 | 2.31321E-18 | ||
| MobiDBLite | 803 | 931 | 129 | - | – | |
| MobiDBLite | 873 | 892 | 20 | - | – | |
| MobiDBLite | 901 | 915 | 15 | - | – | |
| CDD | 991 | 1047 | 57 | 4.14288E-19 | ||
| SMART | 996 | 1023 | 28 | 0.59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Biological process | Regulation of DNA-templated transcription, elongation | Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase. |
Expression pattern of LotjaGi1g1v0273000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…