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LotjaGi1g1v0508500.2

Overview

Field Value
Gene ID LotjaGi1g1v0508500
Transcript ID LotjaGi1g1v0508500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description tRNA guanosine-2'-O-methyltransferase; TAIR: AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase; TrEMBL-Plants: tr|G7L451|G7L451_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi1g1v0508500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:102703680..102708047) extracted from Lotus japonicus Gifu genome v1.2.

CAGATGAGATGAGTGCCTGCAAAACCCTTCTCTGCGCTTCACTCTCTTCCTCCTTCATATCTCTCCCCTCTCCGCCACCC ACCGCCACCGTCCTTTCTCTCTCCTCGCTCCGCCGCCACCACCACCGCCTCACGTGGAGATGTTGTCACACATCATCTCA AACCGTCCCTGCTTCCGATTCCTCCTCAACCGAAGATGAAGAACCAGAAGAACCCCAATTGCAGCACCTCCTCTCCACCG CCGAGGGAGTCTCCTCGCTCATGAAAATGGACCGCAAGCCTCTTCTCCTCCCTCACAAGCCTCACCCTCGCTGGTTCCCT TACCTCGACCGCTTCCGCTGCGGCGACGGTTCGACCCTCACCAGCACTGAGGTCATCGATGCTCTCGCTCCGTGCATCTC TGAGCCGCGGAGGCTCAGGTTCGGGAATGCTGTTGGGAACCGGAGCTACTCTCTCTGCCTTGTGGTGGAAGGGCTTCGAG ACTTCGGCAATGTCTCCGCTTCGTTCCGCTCTGCTGATGCTCTTGGGGTTCAGTCCGTTCATGTTGTGTCTTCTGACGCC AACAAAAGGTGTTAACACTGTTGAGGTGAAACAAAATTTGAAGTAGTGTGTTTAATTTTTCTAATTTAATAGAATTCTAT GATGTTTATACTAGTAATGAAGGATTAGAACATTGAATTTATGTTAGAGGAATATGTACTGATCAAGGGGATGGGTAGTT CACATGGTTGGGTTAAGGGTAATTGTAGGTGAATGGCTCGACCCTGAGGAGGGATAATTTGTACTAATTTACTAACGACT AACATTTGCCTATAAAAAAAATGTGGATGTTATCATCACTTGCATCAATTTAAGAGACTTCTTTCAAATTTGACAATCAT TTTAAGGCATTATGTTGAGTTATGAACTGAATTATGTGGACATTGTTGAAACTATTGGATGGAGTATTGCATTGTAATTA ATTTCATTTTTCACGATGATCGACAGCCTCTGAAAGCTGGGTTCCTTGCTGTAGGTATAAAGATAATCGCCATGTGAGCA TGGGTGCGGAGAAATGGTTGGATATTGAACTGTGGGACTCTCCAAAGGGTTGTTTTGATATATTGAAGTCACGTGGTTAC CAAATTGCCACAACTCATTTGGGAACGGATGCGGTATTGTTTGTCTCTGCTATGTTTTGTTAGTTCATATCCAGATAAAT GGTATGCAATCTGCATCGTATTCATTCATGCAAATGAATGTTTTTCAGTGTTGCACTTGCACTGCTATTTTGTTTTTAGT TATTATAAATCTGGAGGCAAAATGTCTGAAATTCTCAAGTGGCATGCAGTGAAGTTCACTAACCTTCTCTTACTTTTTAT AGGTTTCTATTTATGAATTAGACTGGTCCCGTCCAACTGCAATAGTAGTCGGGAATGAAAATAGGTTATTTCCTTTATTT TCATCTCTTGTCTATCCATAAATTAATAGATGCCTTATTAGTAAAGTTGGTTTGGTTCAATTTGAAAAATCCCAAGTAAT ACTTTTGAAGCTGCAAATATGAGCTGATTGTCAATTTATTCTGGATGAACTATGTCTATGTGATCTTGATGCTGAATTAA ATGTCAAATAGTTGTACACTTGTACTTCTTGTAACTTGGGTTTGACTTTTCAGCTCAGATTTCTTATGTATTTTCTTCTT GCAGGGGTATTAGTGATGAGGCTCTGGAATTGTCAGATTTACATTGCAGTATTCCAATGAATGGGATGGTGGATTCTTTC AATGTTTCAGTTGCAGCAGGAATCCTCATGCACCATGCTGTTTGTGATAGAATATCTCGCACGGTAAGGATTTGAATCAC GCACTTTATTTGGCACCTAAGGACATATCAACCTGAATATTATATCTGATATTTTTTGAATTGTAGTGTACCATGGTAGT CTTCCTTTTCTCTTAACTCATTTAATTTGAGTAAAAAAGAGTCATGTTACGATAAGATTTTGAAAAATCAGAATCTACAA TTTTTTTTTTGCAGTTTATGGAGTTTCTCAAAATAATCTACTGAAATGGGAGGAAAAATAAAGTGTGCTTTTGTATAATT ATAATCAGATCGTTTCATTTCTGAAAAAAAAAAATCATTATTTTATCCGACCTCAAAATCACTTATTTACCCTGAATCAT AGGAATAGGTATAAAAGTACCGTGGTTATTCAGAGCAGCACTTTTGTTTTGTTTTTATATATTGCCTCTAAATGAAGAAG TGAACAAGTCTGGTTCAACCACATTAAACTCAAGTCTGGTTCTATAATTCTTCAGTTTAACGTTTAGTAGACTCTGATTT TTCCATAACATATGCAGGGTCGTCATGGTGATCTGACAGAAGAAGAAAGACAAATTCTGCTTGCAGAGTTCTTGCTGCGC CATAGCAAGAGTGCCATTAATGTTGTTGAAGGTTATGCCAAACGCAAGGCAGCAACTTTGACCTAATAGCCATGACAAGA AGTTAAATTTCTGCATGTTTGAATGTTCTTGACAAGGATACGGCATGAAACTAGATCGCATCTGGTGACTGATTATTCAT ACAAACTAGGGAAGCAAATGCTGCTACATTGCATTAGCTTAACCTTTGCGCACGAGGCTTTATAGACAAACAGTTGGGAT CCTACCATAGAATACCAAGCTCCTGCTTTGACTGTAGAATAGCCCAATTTATTTATAAATTGAGAATGATTTCATAAGAA GTGCAAATTTTTGTTTAGTTTCTGGGTATAACTGATTGTAAAAGACAAGGATTTTAGTGCTTGTCCTAGTCTGAAACATT TTGACACTAGCTAGATGAAAATGTATTTTTTTTCCCAAAGAAACATGTTGAGTTCATCAGTAAGAATCCAGCAATTTTGA TTCTTGTACTACAATTAATAATGAATAATACTCGTTATTTGGGCTCCCTTTTTCATGAAAAAAAAGGCATGGAAATTGTA TTTGCTTCATTTCATGGCAATACAGATTGATAGTATTTCCTTTTTCGAAAAGATAATTCTAAAGTGATTTTGTCAATAAA GTGGAGTTGTCTAAATGACCAATGATAAAGTTTGAGTTAAATAACAGAGTTCATTTACTGTATACAAAGAAATGCTTGTG TAAAGTTACACAAACCTAGGTTCACCTGTTATCACAAGTTTAATAGCAGGTCACCCCTTTTTTAATTTAAATTAGGTAAA ATAAAAAAATAAATCTAAATAAGTCTAAATCTGTCATCACCATCCTTAATCTTCTTCTTTCATCTAAACTCCACTCGTGA TATTCATCTTCACTCTTCATCTTCTTCATTATTCATCTTCTAAATCAACATAAACTTACCTACAGTACAATAGGTACTGT TATTGCTGTTCTCAAATGAAAGAACGACATGTGTGCTAATTTATCTACCCTCTCTATAGCGACGACAAGGCCTTTGAGTT CTCGAGACATTGAATTTGGGGACATGGTGGTGACTTGCCCGTGGTTCCCCTTCTATGACTATGATAATGGAAACAGAAGA GTAAAGCACTGACGGTGTTAATTAATTAAATTTTGATATTAATGATATGAAGTTAATAGTACAGATGTTCTTTTATCATT GGGTAACAGCAAAACCCAGACCACACCACCACCGCTGAACCACCACCAAGTTGATGTATTTTTCTTCAGATCTCTGGCCC TTGTTCAACAGTAAAGCTCAAAGATGAGAAAAAAATGTGAAAGCTTCAAGCTTTTCAACCCAAATCGGAAGAGAAAAACT TCAGATCTGGCCTCAACATCTGAGTCTGTGGCACACTCAGATGTAAAGTTCCTCCTTTCTCAACCCACATCGAACCACCA CCATCAAAATTCCATCCCTCAAAGCCTCAACCCCGATTTGGACAACTTAAAGATGTTCAGTGTATAGTGAGGGATGAGCA TAAAACCAGATATGTTTCACTTGAAGAACAACAACCACCGCCACACCACAGCCCCTCTCACGGGAAGAAATAGTCATGGC GAACAAGAAGGTGTGCGAGATTCACCACCTGCAACAGCGTCATCGCGTGCTCAAGGGGAAGGGGTAGGTACCTGAATCAC TGAAACTTCACCGCAAGAACAAGTGCAAGAATAACGACGATTTGCAAATTGGCGAAGATCTGAACCATCTATCGCACCGA ACCTCCATGATCCCGACCCACCATCGACAGAATCAAACCAGATATGAACTCCTCGACCTCGTCGTCTTCAATTGAAATGG GTTGTTGGTTGAGGGTGTAGATGTTGAAGATGGTAAATGCAATGCGGTTGGTTTCCTTTCTGGGTTGTGTAATACTATAT GTTTTGTCTTTAATTTCACTTCTTTTCTGGATTTTATTGTTAGAGGAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0508500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGCCTGCAAAACCCTTCTCTGCGCTTCACTCTCTTCCTCCTTCATATCTCTCCCCTCTCCGCCACCCACCGCCAC CGTCCTTTCTCTCTCCTCGCTCCGCCGCCACCACCACCGCCTCACGTGGAGATGTTGTCACACATCATCTCAAACCGTCC CTGCTTCCGATTCCTCCTCAACCGAAGATGAAGAACCAGAAGAACCCCAATTGCAGCACCTCCTCTCCACCGCCGAGGGA GTCTCCTCGCTCATGAAAATGGACCGCAAGCCTCTTCTCCTCCCTCACAAGCCTCACCCTCGCTGGTTCCCTTACCTCGA CCGCTTCCGCTGCGGCGACGGTTCGACCCTCACCAGCACTGAGGTCATCGATGCTCTCGCTCCGTGCATCTCTGAGCCGC GGAGGCTCAGGTTCGGGAATGCTGTTGGGAACCGGAGCTACTCTCTCTGCCTTGTGGTGGAAGGGCTTCGAGACTTCGGC AATGTCTCCGCTTCGTTCCGCTCTGCTGATGCTCTTGGGGTTCAGTCCGTTCATGTTGTGTCTTCTGACGCCAACAAAAG GTATAAAGATAATCGCCATGTGAGCATGGGTGCGGAGAAATGGTTGGATATTGAACTGTGGGACTCTCCAAAGGGTTGTT TTGATATATTGAAGTCACGTGGTTACCAAATTGCCACAACTCATTTGGGAACGGATGCGGTTTCTATTTATGAATTAGAC TGGTCCCGTCCAACTGCAATAGTAGTCGGGAATGAAAATAGGGGTATTAGTGATGAGGCTCTGGAATTGTCAGATTTACA TTGCAGTATTCCAATGAATGGGATGGTGGATTCTTTCAATGTTTCAGTTGCAGCAGGAATCCTCATGCACCATGCTGTTT GTGATAGAATATCTCGCACGGGTCGTCATGGTGATCTGACAGAAGAAGAAAGACAAATTCTGCTTGCAGAGTTCTTGCTG CGCCATAGCAAGAGTGCCATTAATGTTGTTGAAGGTTATGCCAAACGCAAGGCAGCAACTTTGACCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0508500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSACKTLLCASLSSSFISLPSPPPTATVLSLSSLRRHHHRLTWRCCHTSSQTVPASDSSSTEDEEPEEPQLQHLLSTAEG VSSLMKMDRKPLLLPHKPHPRWFPYLDRFRCGDGSTLTSTEVIDALAPCISEPRRLRFGNAVGNRSYSLCLVVEGLRDFG NVSASFRSADALGVQSVHVVSSDANKRYKDNRHVSMGAEKWLDIELWDSPKGCFDILKSRGYQIATTHLGTDAVSIYELD WSRPTAIVVGNENRGISDEALELSDLHCSIPMNGMVDSFNVSVAAGILMHHAVCDRISRTGRHGDLTEEERQILLAEFLL RHSKSAINVVEGYAKRKAATLT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43453
1 341 341 2.1E-138 –
PANTHER
PTHR43453:SF1
1 341 341 2.1E-138 –
Phobius
SIGNAL_PEPTIDE
1 30 30 - –
SignalP_GRAM_POSITIVE
SignalP-TM
1 26 26 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 6 6 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
7 18 12 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
19 30 12 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
31 342 312 - –
MobiDBLite
mobidb-lite
50 71 22 - –
Gene3D
G3DSA:3.40.1280.10
125 331 207 4.2E-58
IPR029026
Hamap
MF_02060
131 325 195 27.486
IPR033671
SUPERFAMILY
SSF75217
134 312 179 4.38E-42
IPR029028
CDD
cd18092
134 296 163 1.4962E-78 –
Pfam
PF00588
149 290 142 5.1E-33
IPR001537

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0008173
Molecular function RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
Subterm of
GO:0030488
Biological process TRNA methylation The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0508500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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