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Lj1g3v2994560.1

Overview

Field Value
Gene ID Lj1g3v2994560
Transcript ID Lj1g3v2994560.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description tRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi|357502123|ref|XP_003621350.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 30 30 – –
SignalP
SignalP-TM_GRAM_POSITIVE
1 26 26 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 6 6 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
7 18 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
19 30 12 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
31 235 205 – –
MobiDBLite
mobidb-lite
50 71 22 – –
PANTHER
PTHR12029
74 233 160 2.60E-74 –
PANTHER
PTHR12029:SF45
74 233 160 2.60E-74 –
SUPERFAMILY
SSF75217
134 229 96 4.25E-14
IPR029028
Gene3D
G3DSA:3.40.1280.10
145 232 88 2.80E-15
IPR029026
Pfam
PF00588
149 229 81 2.00E-10
IPR001537

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008173
Molecular function RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v2994560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2994560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.