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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR031642
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 12 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.287s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0101309.1
n.a. Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao] gi|508714943|gb|EOY06840.1| chr0 42954267 42968596 +
2 domain predictions
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Lj0g3v0101309.3
n.a. Calcium-dependent lipid-binding family protein isoform 2, partial [Theobroma cacao] gi|508714944|gb|EOY06841.1| chr0 42961642 42968596 +
2 domain predictions
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Lj0g3v0264849.1
n.a. Vacuolar protein sorting-associated protein [Medicago truncatula] gi|357445545|ref|XP_003593050.1| chr0 137263083 137270311 +
2 domain predictions
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Lj2g3v1988700.2
n.a. Pleckstrin (PH) domain-containing protein isoform 2 [Theobroma cacao] gi|508776870|gb|EOY24126.1| chr2 29485873 29533570 -
2 domain predictions
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Lj2g3v2314940.1
n.a. Vacuolar protein sorting-associated protein [Medicago truncatula] gi|357445545|ref|XP_003593050.1| chr2 33546269 33546864 -
2 domain predictions
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LotjaGi1g1v0116300.1
n.a. Vacuolar protein sorting-associated protein, putative; TAIR: AT5G24740.2 vacuolar protein sorting-associated protein, putative (DUF1162); Swiss-Prot: sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|G7IJW3|G7IJW3_MEDTR Vacuolar protein sorting-associated protein, putative; Found in the gene: LotjaGi1g1v0116300 LjG1.1_chr1 18275889 18324688 +
2 domain predictions
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LotjaGi2g1v0417400.1
n.a. Pleckstrin (PH) domain-containing protein isoform 2; TAIR: AT4G17140.3 pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protein 13C; TrEMBL-Plants: tr|G7JYP4|G7JYP4_MEDTR Vacuolar protein sorting protein; Found in the gene: LotjaGi2g1v0417400 LjG1.1_chr2 91545297 91593826 -
2 domain predictions
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LotjaGi4g1v0279000.1
n.a. Vacuolar protein sorting-associated protein, putative; TAIR: AT5G24740.2 vacuolar protein sorting-associated protein, putative (DUF1162); Swiss-Prot: sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|G7IJW3|G7IJW3_MEDTR Vacuolar protein sorting-associated protein, putative; Found in the gene: LotjaGi4g1v0279000 LjG1.1_chr4 64923067 64965169 +
2 domain predictions
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LotjaGi4g1v0334900.1
n.a. Calcium-dependent lipid-binding family protein isoform protein; TAIR: AT1G48090.4 calcium-dependent lipid-binding family protein; Swiss-Prot: sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|A0A072V2R4|A0A072V2R4_MEDTR Calcium-dependent lipid-binding-like protein; Found in the gene: LotjaGi4g1v0334900 LjG1.1_chr4 71424511 71491444 -
2 domain predictions
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LotjaGi4g1v0334900.2
n.a. Calcium-dependent lipid-binding family protein isoform protein; TAIR: AT1G48090.4 calcium-dependent lipid-binding family protein; Swiss-Prot: sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C; TrEMBL-Plants: tr|A0A072V2R4|A0A072V2R4_MEDTR Calcium-dependent lipid-binding-like protein; Found in the gene: LotjaGi4g1v0334900 LjG1.1_chr4 71425799 71485584 -
2 domain predictions
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LotjaGi4g1v0334900.3
n.a. Calcium-dependent lipid-binding family protein isoform protein; TAIR: AT1G48090.4 calcium-dependent lipid-binding family protein; Swiss-Prot: sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C; TrEMBL-Plants: tr|A0A072V2R4|A0A072V2R4_MEDTR Calcium-dependent lipid-binding-like protein; Found in the gene: LotjaGi4g1v0334900 LjG1.1_chr4 71425799 71486084 -
2 domain predictions
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LotjaGi4g1v0334900.4
n.a. Calcium-dependent lipid-binding family protein isoform protein; TAIR: AT1G48090.4 calcium-dependent lipid-binding family protein; Swiss-Prot: sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|A0A072V2R4|A0A072V2R4_MEDTR Calcium-dependent lipid-binding-like protein; Found in the gene: LotjaGi4g1v0334900 LjG1.1_chr4 71425799 71491118 -
2 domain predictions
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