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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR031968
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.976s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0340159.1
n.a. PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max] gi|356500100|ref|XP_003518872.1| chr0 178194320 178197260 +
2 domain predictions
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Lj3g3v0561860.1
n.a. PREDICTED: GRAM domain-containing protein 1C-like isoform X4 [Cicer arietinum] gi|502173547|ref|XP_004515355.1| chr3 6206238 6214704 +
2 domain predictions
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Lj3g3v0561860.2
n.a. PREDICTED: GRAM domain-containing protein 1C-like isoform X4 [Cicer arietinum] gi|502173547|ref|XP_004515355.1| chr3 6206238 6214704 +
2 domain predictions
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Lj4g3v0511330.1
n.a. PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cicer arietinum] gi|502142930|ref|XP_004505156.1| chr4 8778804 8785730 +
2 domain predictions
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Lj6g3v1708400.1
n.a. PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max] gi|356532855|ref|XP_003534985.1| chr6 19337388 19344625 -
2 domain predictions
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LotjaGi1g1v0196800.1
n.a. C2 and GRAM domain-containing protein; TAIR: AT5G50170.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170; TrEMBL-Plants: tr|A0A0R0K9Z2|A0A0R0K9Z2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196800 LjG1.1_chr1 39829436 39835755 +
3 domain predictions
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LotjaGi1g1v0196800.2
n.a. C2 and GRAM domain-containing protein; TAIR: AT5G50170.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170; TrEMBL-Plants: tr|A0A0R0K9Z2|A0A0R0K9Z2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196800 LjG1.1_chr1 39829436 39835755 +
3 domain predictions
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LotjaGi3g1v0067300.1
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TWG7|A0A072TWG7_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288362 7302896 +
3 domain predictions
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LotjaGi3g1v0067300.2
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TJX9|A0A072TJX9_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288362 7302896 +
3 domain predictions
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LotjaGi3g1v0067300.3
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TJX9|A0A072TJX9_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288374 7302557 +
3 domain predictions
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LotjaGi3g1v0067300.4
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TWG7|A0A072TWG7_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288375 7302383 +
3 domain predictions
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LotjaGi4g1v0005000.1
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|I1KNM4|I1KNM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0005000 LjG1.1_chr4 829474 836291 -
3 domain predictions
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LotjaGi4g1v0005000.2
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|I1KNM4|I1KNM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0005000 LjG1.1_chr4 829550 842552 -
3 domain predictions
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LotjaGi4g1v0068800.1
n.a. C2 domain-containing protein / GRAM domain-containing protein; TAIR: AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein; Swiss-Prot: sp|Q8W4D4|BAGP1_ARATH BAG-associated GRAM protein 1; TrEMBL-Plants: tr|K7K882|K7K882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0068800 LjG1.1_chr4 8690588 8699044 +
3 domain predictions
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LotjaGi4g1v0068800.2
n.a. C2 domain-containing protein / GRAM domain-containing protein; TAIR: AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein; Swiss-Prot: sp|Q8W4D4|BAGP1_ARATH BAG-associated GRAM protein 1; TrEMBL-Plants: tr|K7K881|K7K881_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0068800 LjG1.1_chr4 8691301 8698341 +
3 domain predictions
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LotjaGi4g1v0068800.3
n.a. C2 domain-containing protein / GRAM domain-containing protein; TAIR: AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein; Swiss-Prot: sp|Q8W4D4|BAGP1_ARATH BAG-associated GRAM protein 1; TrEMBL-Plants: tr|K7K882|K7K882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0068800 LjG1.1_chr4 8691301 8698341 +
3 domain predictions
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LotjaGi6g1v0281500.1
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|A0A0B2S6D4|A0A0B2S6D4_GLYSO C2 and GRAM domain-containing protein; Found in the gene: LotjaGi6g1v0281500 LjG1.1_chr6 59787365 59794887 -
3 domain predictions
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LotjaGi6g1v0281500.2
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.2 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|A0A0B2S6D4|A0A0B2S6D4_GLYSO C2 and GRAM domain-containing protein; Found in the gene: LotjaGi6g1v0281500 LjG1.1_chr6 59788178 59794213 -
3 domain predictions
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