Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0246100 |
| Transcript ID | LotjaGi2g1v0246100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine protease; TAIR: AT3G27925.1 DegP protease 1; Swiss-Prot: sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic; TrEMBL-Plants: tr|I3S8D7|I3S8D7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0246100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71150764..71155263) extracted from Lotus japonicus Gifu genome v1.2.
GTCATCACCTCACTCCTTAGTCCAACCGAAATCAATGGCTGCATCTACAGCCTCTGCACTCATCACATCCTCCTCACTCT TCCATCTCCGCTCTCGCTCTCGCTCCGCCGCATTTTCTCGCTCCTCCTCCTCAACCACCAAACCCACCTTCCATCTCTCA AAATCTCTCCATCTCCACACACCCCATCACCCCATTTCACACCCCACTCTCTCACTCCTTCAATCTCCCACTCCCAAAAC CTGCTTCGATTCCGCTCTCATTCTCTGCACTTCCCTCGCCCTCTCCTTCACCCTCTTCTTCACCAACACTGATTCCGCCT CCGCCTTCGTCGTCACGCCGCCGAGGAAGTTGCAGTCCGATGAACTCGCCACTGTTCGTCTCTTCCAAGAGAATACTCCC TCTGTTGTCTACATCACCAACCTTGCTGTCAAGTAACATTTTCAGTGTTTATTGTTGCTGTTTTAGGATACCCTTTTGCT TTGTTTTGTGTTTTTGAATGTGGGTTTTTTGTGTTTAGGCAGGATGCGTTTACGTTGGATGTGTTGGAGGTTCCTCAAGG ATCTGGGTCTGGATTTGTTTGGGATAAGGAAGGGAATATTGTGACCAATTATCACGTTATTCGGGGTGCTTCTGATCTCA GGTTGGTTGCTTCTGCATTAGACTTGTACTCTATGCATTTTGTTTCTAGTTTGACATGTCTGATTTTGAGTCATATGATG CTGGCAAGTGGTAACTTTTATGTTATGCACCTAAATCTGTACATGTTATATATAATGTAACTCATCTAATGTTAAATGGA TGATGTAATTTAACTTATGAAACAAAAGGGAGTTGGTAATAATGTTGTATGGGAGCACAAACACTTCAAAATACTAGTTA TGTCATAGCTATGTTAATACTTTTATTTTGTAAGACATTTGAAGGACACTTGTATTTTACAGTTTTTTCCTCTTTTTCTA AACTTCTATACCAAATAAGTGCAATACCACAGTATTTAGGTAAATTCTAGAATTTTGGGACTTGGGATGCCACAATAGTT AGATAAATGGCAGACTTTAACTGAATTCATTGAGGAGAAAGTTTGACAGTAGCTAGATACACATTTTGGGACTTGGGATG GCTTAAAATGTGAGCGAATTTATTTCTTTTGTTCAATGAGATGCTAGTTATGTGCAGGGTCACCCTTGCTGACCAGTCAA CCTATGATGCAAAAGTTGTTGGTTTTGACCAAGACAAGGATGTTGCTGTGTTACGTGTTGACGCGCCAAAAGACAAGCTG AGGCCTATACCTGTTGGGGTCTCTGCAAACTTGCTTGTTGGTCAGAAAGTGTATGCTATTGGGAACCCGGTGAGATGTCC CTGCATATTGATGCATGTTGTATTGTAAACATGTATTCTCTATGATTTTTCCAATCTAGAGATGTGATGACAATCGTGTT TGAATTTACTATTAGTTAGAGCTTCAAAGAAAGTTAGAATTTTTATAATCAACGGGATTTCAAACTTTCCTAAATATTTT TTTAACAGTTCACTCGTTTGATCTAACATATAGTTTTTGTAATTATGTATTCATTTAGTCAGTGTAGCTTGCTTCTGTTG TAATTCCGCACTGTCTCTGCTAACATTTATGTTAAACAAATATTGGAGATCTTAGTTACTGATGCCTCTGATGGAAACCT AGATTTGTAGCCCTTTCTGTTCCTCAAAATCTGGATGAGTTCCGTTCTGCATCACTATCTAAAAGTATTGTGTGGGTTTC GCTTTTTTTTTAAATGAGGGACTCACCTACTAAGAGAGGGATGGATAAAAAACCAGAAAATATGGCTGGTACCTAGTTTT CTTTGGACCTTTTGCCTTGTGAATTGCTGCCATATGCTTTATGTAGATTTTAATCATTCCTGACTTGAATGCTATTTGTT GTTGTCTTGTTGATGATTGAATACAGCATTACTGACTACGTCATGAATATGACAATCTGATTCTTATATTGCAGTTTGGA CTTGACCACACTCTTACAACTGGTGTCATCAGGTATGAATTGAAAACCTTGAAGTGAATATTTTAATGTAACTTTTCACC TCCTCATCATTCATCAACTATGAAAAGAGTTTCTACTTTGCTATTCCTTTTCCTTTTCTCATGTGGGTTATACATGCTAA AACATTTTATGTAGGTGTCTAAAAATAGCAATGATAGTCATCTTGTTCTCAATGCATTCCGAATATCAATTTTTCTAATT AGCAGCACTAGGGATGACGACCGGAAGACATTGACATTCATCATTTTCATTAACATCTGTCTGATGTTTATGCAAAATTT AAGTAAAATAATGATAAATGAGACTGCATCCATTGTACTAAAAATAAATAATGTGACTGCTTCAAGTTTCAATCTGCATA CAATTACTCACAAATAAAATAAATGAGGGGGAGTAGGGTTCAAGAATTAGACAAAAAGACATTTCGTATTATAGAAACTC TTGTGAAAAATCGTATTGTTCTTCAAATGGTGCACCTCTAATCCCTTTGCTGAATTAAAGACAAGTCATAGTTCCTGCAA CATCTTCTCTTCCTTTTCTTTGAAAGTTCAACTTTAAGCAAGACAAATCATATGGTAAATCCATATTGTTTTTTTAAACG TATGCATGTTAAACACATACTATACTTATGCTGAAAAACCCGGGTGAGAAATGTTTGATTTATTTTATTACAATTTTCCT TTTGTATTGATTGCATTTTTTGATACATCTCAATAGTGGACTTCGGCGAGAAATTAGTTCCGCTGCTACTGGTCGTCCAA TTCAAGATGTTATACAGACAGATGCAGCTATTAATCCTGGTAACAGTGGAGGGCCACTCCTAGATAGTTCTGGAAACCTC ATTGGGATAAATACAGCTATATACTCCCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCAGTGGATACTGTGAG CTTTGAATCTTCTCTTTCTTTGCCTAATTCTTCCTTCACAAAGACATCTTTCCGTTTAAACACATCTTTCTTTTTTCATA TTTTCTATAATAACTCACGTGCTTTTTATTTTATATATCTAGGTAAATGGCATTGTTGACCAGTTGGTGAAGTTTGGGAA GGTGACAAGACCTATTTTAGGTATCAAGTTTGCTCCAGATCAGTCTGTGGAGCAGTTAGGGGTAAGTGGAGTCCTCGTCT TGGATGCTCCTGCCAATGGTCCAGCCGGAAAAGCAGTAAGTTAATTCTTTATATCTGTAAATGATGAAGTTCATTCTTAT TAGAGTCAAGCCAAAAGCTCTAATAGTAGCATGGATTACATATTAACATAAAAACATCCTATTTACTTCCACCAAACCCA CTCAAGCTTGTCTCAAATACTGGTCCAAGGACCTATACAACACTCAATTTTTCTTATGTGAGCTTCATTTATATGGTGTC TTATTTTATGTCACTCTTTGAAATGGTTGAATTATTCTTTTACAATTTTCCAATGGTTAGGGATTTGGCTGATGGAGCTG GTCAAATTTCTATTTTGTAGGGCTTGCAATCAACAAAGCGTGATTCATATGGTAGACTCATTTTAGGAGACATCATAACA TCTGTGAATGGTACGAAGGTTACTAATGGAAGTGATCTGTACAGAATTCTTGACCAGTGTAAAGTGGGTGATAAGGTATG GTGCTGATCCATTTTCTCTGTTACTCTTGTGTCTCTTTGGAATGTCTCATTTGTTAATTTCAATATAAGGTAGCTTTTTC CATTTGAAAAATTCTTATTAAAATCCTGGGGTTTCCCATAAAAAAATGGAACATGTTCAAATTTGATTGATCTTTATGTT TAAGGATATGGTTGACACAATAATCAGCAACAACAACAACCAAAGCCTCTTTTCCCATTAGGTGGGGTCAACTATATGGA CAGCATTATGCCACAATGTCCTACCATGAATTAAGTCTAATGACAGGCTATGTCATTCTAAATCTCTCTTAATTGTTTAA CCTACAACTTTTCTTGGTCTTCCTCTTGCTCTAGTTGTTAGATTATCTTTTATCTGGTCTACCTTCTTTACAGGTGCTCC TACATATCCAATCCATTGATGACCAAACCACCTAAAGACAAGACCGCTATCATCTTTTATACAATGAGAGCTACCCCAAT TTCCTCTCTGATGATTTCATTCATAATCCCATTGTCCTGTGTGATCATTCCTCCATCAGATTATAACATTAGCCTTACTT TCTCGTTGGTTCTTTACCGTCCAATATTCTATCCGTGAAGATTTGTAGGGGTCTTATAGCAGTACAGTAAAAAAATTCTT TTAAATATGTAGTTATAGAAGTTCCTCTACATATTAAGTTACATTGCCCAATCTGAAGCTGATTAATTATCCTAGTTTGA TACTTAAGATGTTAATATTCAGGTGACTGTGGAGGTTTTGCGAGGTGACCACAAGGAGAAGATCCCTGTCATCCTGGAGC CAAAGCCAGATGAATCATGA
CDS sequence (LotjaGi2g1v0246100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCATCTACAGCCTCTGCACTCATCACATCCTCCTCACTCTTCCATCTCCGCTCTCGCTCTCGCTCCGCCGCATT TTCTCGCTCCTCCTCCTCAACCACCAAACCCACCTTCCATCTCTCAAAATCTCTCCATCTCCACACACCCCATCACCCCA TTTCACACCCCACTCTCTCACTCCTTCAATCTCCCACTCCCAAAACCTGCTTCGATTCCGCTCTCATTCTCTGCACTTCC CTCGCCCTCTCCTTCACCCTCTTCTTCACCAACACTGATTCCGCCTCCGCCTTCGTCGTCACGCCGCCGAGGAAGTTGCA GTCCGATGAACTCGCCACTGTTCGTCTCTTCCAAGAGAATACTCCCTCTGTTGTCTACATCACCAACCTTGCTGTCAAGC AGGATGCGTTTACGTTGGATGTGTTGGAGGTTCCTCAAGGATCTGGGTCTGGATTTGTTTGGGATAAGGAAGGGAATATT GTGACCAATTATCACGTTATTCGGGGTGCTTCTGATCTCAGGGTCACCCTTGCTGACCAGTCAACCTATGATGCAAAAGT TGTTGGTTTTGACCAAGACAAGGATGTTGCTGTGTTACGTGTTGACGCGCCAAAAGACAAGCTGAGGCCTATACCTGTTG GGGTCTCTGCAAACTTGCTTGTTGGTCAGAAAGTGTATGCTATTGGGAACCCGTTTGGACTTGACCACACTCTTACAACT GGTGTCATCAGTGGACTTCGGCGAGAAATTAGTTCCGCTGCTACTGGTCGTCCAATTCAAGATGTTATACAGACAGATGC AGCTATTAATCCTGGTAACAGTGGAGGGCCACTCCTAGATAGTTCTGGAAACCTCATTGGGATAAATACAGCTATATACT CCCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCAGTGGATACTGTAAATGGCATTGTTGACCAGTTGGTGAAG TTTGGGAAGGTGACAAGACCTATTTTAGGTATCAAGTTTGCTCCAGATCAGTCTGTGGAGCAGTTAGGGGTAAGTGGAGT CCTCGTCTTGGATGCTCCTGCCAATGGTCCAGCCGGAAAAGCAGGCTTGCAATCAACAAAGCGTGATTCATATGGTAGAC TCATTTTAGGAGACATCATAACATCTGTGAATGGTACGAAGGTTACTAATGGAAGTGATCTGTACAGAATTCTTGACCAG TGTAAAGTGGGTGATAAGGTGACTGTGGAGGTTTTGCGAGGTGACCACAAGGAGAAGATCCCTGTCATCCTGGAGCCAAA GCCAGATGAATCATGA
Protein sequence (LotjaGi2g1v0246100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASTASALITSSSLFHLRSRSRSAAFSRSSSSTTKPTFHLSKSLHLHTPHHPISHPTLSLLQSPTPKTCFDSALILCTS LALSFTLFFTNTDSASAFVVTPPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKEGNI VTNYHVIRGASDLRVTLADQSTYDAKVVGFDQDKDVAVLRVDAPKDKLRPIPVGVSANLLVGQKVYAIGNPFGLDHTLTT GVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVK FGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPANGPAGKAGLQSTKRDSYGRLILGDIITSVNGTKVTNGSDLYRILDQ CKVGDKVTVEVLRGDHKEKIPVILEPKPDES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| PANTHER | 22 | 430 | 409 | 5.2E-220 | – | |
| PANTHER | 22 | 430 | 409 | 5.2E-220 | – | |
| Phobius | 25 | 431 | 407 | - | – | |
| Gene3D | 95 | 211 | 117 | 4.6E-45 | ||
| SUPERFAMILY | 114 | 319 | 206 | 1.02E-58 | ||
| Pfam | 149 | 288 | 140 | 4.7E-36 | – | |
| PRINTS | 158 | 170 | 13 | 1.8E-47 | ||
| PRINTS | 179 | 199 | 21 | 1.8E-47 | ||
| Gene3D | 212 | 326 | 115 | 2.1E-41 | ||
| PRINTS | 221 | 245 | 25 | 1.8E-47 | ||
| PRINTS | 259 | 276 | 18 | 1.8E-47 | ||
| PRINTS | 281 | 298 | 18 | 1.8E-47 | ||
| SUPERFAMILY | 285 | 415 | 131 | 1.45E-16 | ||
| ProSiteProfiles | 318 | 415 | 98 | 11.059 | ||
| CDD | 327 | 422 | 96 | 3.63337E-18 | – | |
| Gene3D | 327 | 431 | 105 | 2.5E-44 | ||
| SMART | 327 | 415 | 89 | 7.2E-10 | ||
| Pfam | 327 | 423 | 97 | 9.6E-15 | ||
| PRINTS | 373 | 385 | 13 | 1.8E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi2g1v0246100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…