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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:3.40.50.1460
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.022s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0057339.1
n.a. PREDICTED: metacaspase-1-like [Solanum lycopersicum] gi|460371036|ref|XP_004231352.1| chr0 18800380 18801640 -
2 domain predictions
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Lj0g3v0180069.1
n.a. PREDICTED: metacaspase-9-like [Cicer arietinum] gi|502107496|ref|XP_004493282.1| chr0 87537700 87537975 +
2 domain predictions
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Lj0g3v0259199.1
n.a. CM0216.410.nc [Lotus japonicus] gi|164564742|dbj|BAF98223.1| chr0 134685588 134689255 -
2 domain predictions
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Lj0g3v0259199.3
n.a. CM0216.410.nc [Lotus japonicus] gi|164564742|dbj|BAF98223.1| chr0 134688101 134689255 -
2 domain predictions
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Lj0g3v0284979.1
n.a. CM0216.400.nc [Lotus japonicus] gi|164564741|dbj|BAF98222.1| chr0 147842645 147844285 +
2 domain predictions
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Lj0g3v0318629.1
n.a. PREDICTED: metacaspase-4-like [Glycine max] gi|356526409|ref|XP_003531810.1| chr0 166402646 166404055 +
2 domain predictions
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Lj0g3v0339169.1
n.a. CM0216.400.nc [Lotus japonicus] gi|164564741|dbj|BAF98222.1| chr0 177654043 177655294 -
2 domain predictions
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Lj0g3v0349089.1
n.a. peptidase C14 [Fibrisoma limi] gi|496582894|ref|WP_009282733.1| chr0 183281542 183282501 -
2 domain predictions
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Lj1g3v3608320.1
n.a. PREDICTED: metacaspase-1-like [Glycine max] gi|356495863|ref|XP_003516790.1| chr1 41520173 41524907 +
2 domain predictions
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Lj1g3v3608320.2
n.a. PREDICTED: metacaspase-1-like [Cicer arietinum] gi|502103244|ref|XP_004492236.1| chr1 41520173 41526147 +
2 domain predictions
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Lj1g3v4048420.1
n.a. Peptidase C14, caspase catalytic subunit p20 [Medicago truncatula] gi|87162873|gb|ABD28668.1| chr1 47840519 47841802 -
2 domain predictions
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Lj1g3v4048430.1
n.a. PREDICTED: metacaspase-9-like [Cicer arietinum] gi|502107496|ref|XP_004493282.1| chr1 47842503 47848657 -
2 domain predictions
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Lj2g3v0636050.1
n.a. dihydroxyacetone kinase family protein [Arabidopsis lyrata subsp]. lyrata] gi|297834694|ref|XP_002885229.1| chr2 9979874 10003422 -
2 domain predictions
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Lj3g3v0382770.1
n.a. PREDICTED: metacaspase-4-like [Cicer arietinum] gi|502155232|ref|XP_004510001.1| chr3 3128764 3131110 -
2 domain predictions
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Lj3g3v3386670.1
n.a. CM0216.410.nc [Lotus japonicus] gi|164564742|dbj|BAF98223.1| chr3 41810217 41812088 -
2 domain predictions
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Lj3g3v3500120.1
n.a. metacaspase 7 [Arabidopsis thaliana] gi|42563346|ref|NP_178049.2| chr3 42525448 42526675 +
2 domain predictions
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Lj4g3v0341200.1
n.a. PREDICTED: metacaspase-3-like isoform X1 [Cicer arietinum] gi|502142133|ref|XP_004504807.1| chr4 4606206 4609295 +
2 domain predictions
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Lj4g3v0341210.1
n.a. PREDICTED: metacaspase-1-like [Cicer arietinum] gi|502142131|ref|XP_004504806.1| chr4 4610744 4616870 -
2 domain predictions
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Lj4g3v2225720.1
n.a. disrupted meiotic cDNA 1 [Pseudoroegneria stipifolia] gi|281704340|gb|ADA77115.1| chr4 30856565 30859330 +
2 domain predictions
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Lj4g3v2363110.1
n.a. PREDICTED: metacaspase-1-like [Cucumis sativus] gi|449432362|ref|XP_004133968.1| chr4 32483665 32486974 -
2 domain predictions
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Lj5g3v0962800.1
n.a. metacaspase 9, partial [Capsicum annuum] gi|472271622|gb|AGI37355.1| chr5 14741634 14763078 -
2 domain predictions
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Lj5g3v1261910.1
n.a. CM0216.400.nc [Lotus japonicus] gi|164564741|dbj|BAF98222.1| chr5 20100998 20102384 -
2 domain predictions
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Lj5g3v1529850.1
n.a. Metacaspase-1 [Medicago truncatula] gi|357445871|ref|XP_003593213.1| chr5 22172051 22172716 -
2 domain predictions
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Lj5g3v1792290.1
n.a. PREDICTED: metacaspase-4-like [Glycine max] gi|356526409|ref|XP_003531810.1| chr5 25429358 25430898 -
2 domain predictions
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Lj5g3v1813870.1
n.a. CM0216.400.nc [Lotus japonicus] gi|164564741|dbj|BAF98222.1| chr5 26035205 26036981 -
2 domain predictions
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Lj6g3v2218130.1
n.a. Metacaspase-1 [Medicago truncatula] gi|357445869|ref|XP_003593212.1| chr6 25654979 25657159 +
2 domain predictions
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Lj6g3v2218150.1
n.a. PREDICTED: metacaspase-1-like [Cicer arietinum] gi|502077234|ref|XP_004485589.1| chr6 25658837 25664496 +
2 domain predictions
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LotjaGi1g1v0365800.1
n.a. Vacuolar-processing enzyme; TAIR: AT4G32940.1 gamma vacuolar processing enzyme; Swiss-Prot: sp|P49043|VPE_CITSI Vacuolar-processing enzyme; TrEMBL-Plants: tr|I1K8B5|I1K8B5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0365800 LjG1.1_chr1 84368187 84379753 -
1 domain prediction
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LotjaGi1g1v0365800.2
n.a. Vacuolar-processing enzyme; TAIR: AT4G32940.1 gamma vacuolar processing enzyme; Swiss-Prot: sp|O24325|VPE1_PHAVU Vacuolar-processing enzyme; TrEMBL-Plants: tr|I1K8B5|I1K8B5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0365800 LjG1.1_chr1 84368812 84379359 -
1 domain prediction
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LotjaGi1g1v0365800.3
n.a. Vacuolar-processing enzyme; TAIR: AT4G32940.1 gamma vacuolar processing enzyme; Swiss-Prot: sp|O24325|VPE1_PHAVU Vacuolar-processing enzyme; TrEMBL-Plants: tr|I1K8B5|I1K8B5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0365800 LjG1.1_chr1 84368812 84379622 -
1 domain prediction
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LotjaGi1g1v0616200.1
n.a. Vacuolar-processing enzyme; TAIR: AT4G32940.1 gamma vacuolar processing enzyme; Swiss-Prot: sp|P49044|VPE_VICSA Vacuolar-processing enzyme; TrEMBL-Plants: tr|A0A151S655|A0A151S655_CAJCA Vacuolar-processing enzyme; Found in the gene: LotjaGi1g1v0616200 LjG1.1_chr1 116293195 116297343 -
1 domain prediction
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LotjaGi1g1v0616600.1
n.a. Vacuolar-processing enzyme; TAIR: AT4G32940.1 gamma vacuolar processing enzyme; Swiss-Prot: sp|P49044|VPE_VICSA Vacuolar-processing enzyme; TrEMBL-Plants: tr|A0A151R8G0|A0A151R8G0_CAJCA Vacuolar-processing enzyme; Found in the gene: LotjaGi1g1v0616600 LjG1.1_chr1 116325013 116328233 -
1 domain prediction
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LotjaGi3g1v0524000_LC.1
n.a. Metacaspase; TAIR: AT1G79310.1 metacaspase 7; Swiss-Prot: sp|Q6XPT5|MCA7_ARATH Metacaspase-7; TrEMBL-Plants: tr|I3T5T7|I3T5T7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0524000_LC LjG1.1_chr3 94109640 94111034 +
1 domain prediction
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LotjaGi4g1v0011400_LC.1
n.a. beta-galactosidase 17; TAIR: AT1G72990.1 beta-galactosidase 17; Swiss-Prot: sp|A0KFJ6|META_AERHH Homoserine O-succinyltransferase; TrEMBL-Plants: tr|K7L968|K7L968_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011400_LC LjG1.1_chr4 1411342 1417905 -
1 domain prediction
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LotjaGi4g1v0209700.1
n.a. Vacuolar-processing enzyme; TAIR: AT1G62710.1 beta vacuolar processing enzyme; Swiss-Prot: sp|P49046|LEGU_CANEN Legumain; TrEMBL-Plants: tr|I1K0K8|I1K0K8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0209700 LjG1.1_chr4 48718617 48724466 -
1 domain prediction
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LotjaGi5g1v0040100.1
n.a. Vacuolar-processing enzyme; TAIR: AT4G32940.1 gamma vacuolar processing enzyme; Swiss-Prot: sp|O24325|VPE1_PHAVU Vacuolar-processing enzyme; TrEMBL-Plants: tr|A0A0B2RVB7|A0A0B2RVB7_GLYSO Vacuolar-processing enzyme; Found in the gene: LotjaGi5g1v0040100 LjG1.1_chr5 6781988 6789199 -
1 domain prediction
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LotjaGi5g1v0040100.2
n.a. Vacuolar processing enzyme; TAIR: AT4G32940.1 gamma vacuolar processing enzyme; Swiss-Prot: sp|P49044|VPE_VICSA Vacuolar-processing enzyme; TrEMBL-Plants: tr|Q5QL07|Q5QL07_SOYBN Vacuolar processing enzyme 2; Found in the gene: LotjaGi5g1v0040100 LjG1.1_chr5 6782183 6787307 -
1 domain prediction
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LotjaGi6g1v0011700_LC.1
n.a. Metacaspase; TAIR: AT1G79310.1 metacaspase 7; Swiss-Prot: sp|Q6XPT5|MCA7_ARATH Metacaspase-7; TrEMBL-Plants: tr|A0A072TET9|A0A072TET9_MEDTR ICE-like protease (Caspase) p20 domain protein; Found in the gene: LotjaGi6g1v0011700_LC LjG1.1_chr6 2259073 2259483 -
1 domain prediction
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LotjaGi6g1v0200400.1
n.a. Vacuolar processing enzyme; TAIR: AT1G08750.1 Peptidase C13 family; Swiss-Prot: sp|Q8T4E1|GPI8_DROME Putative GPI-anchor transamidase; TrEMBL-Plants: tr|V7AF99|V7AF99_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0200400 LjG1.1_chr6 49708990 49715630 +
1 domain prediction
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LotjaGi6g1v0200400.2
n.a. Vacuolar processing enzyme; TAIR: AT1G08750.1 Peptidase C13 family; Swiss-Prot: sp|Q8T4E1|GPI8_DROME Putative GPI-anchor transamidase; TrEMBL-Plants: tr|A0A0S3SCH0|A0A0S3SCH0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0200400 LjG1.1_chr6 49710516 49712758 +
1 domain prediction
 –