Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:3.90.70.80
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.019s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0029400.1
n.a. Ubiquitin thioesterase OTU1; TAIR: AT1G50670.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1; TrEMBL-Plants: tr|I3T4E6|I3T4E6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0029400 LjG1.1_chr1 3521936 3527212 +
1 domain prediction
 –
LotjaGi1g1v0029400.2
n.a. Ubiquitin thioesterase OTU1; TAIR: AT1G50670.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1; TrEMBL-Plants: tr|I3T4E6|I3T4E6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0029400 LjG1.1_chr1 3521994 3526990 +
1 domain prediction
 –
LotjaGi1g1v0029400.3
n.a. Ubiquitin thioesterase OTU1; TAIR: AT1G50670.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1; TrEMBL-Plants: tr|I3T4E6|I3T4E6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0029400 LjG1.1_chr1 3522576 3525472 +
1 domain prediction
 –
LotjaGi1g1v0768400.1
n.a. OTU domain-containing protein, putative; TAIR: AT3G62940.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B; TrEMBL-Plants: tr|K7MZG8|K7MZG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0768400 LjG1.1_chr1 134100601 134104583 -
1 domain prediction
 –
LotjaGi1g1v0768400.2
n.a. OTU domain-containing protein, putative; TAIR: AT3G62940.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B; TrEMBL-Plants: tr|K7MZG8|K7MZG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0768400 LjG1.1_chr1 134100776 134104544 -
1 domain prediction
 –
LotjaGi1g1v0768400.3
n.a. OTU domain-containing protein, putative; TAIR: AT3G62940.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B; TrEMBL-Plants: tr|V7D1I7|V7D1I7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0768400 LjG1.1_chr1 134101009 134102123 -
1 domain prediction
 –
LotjaGi1g1v0768400.4
n.a. OTU domain-containing protein, putative; TAIR: AT3G62940.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B; TrEMBL-Plants: tr|K7MZG8|K7MZG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0768400 LjG1.1_chr1 134101009 134103388 -
1 domain prediction
 –
LotjaGi2g1v0105200.1
n.a. OTU domain-containing protein; TAIR: AT3G02070.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757; TrEMBL-Plants: tr|I3S995|I3S995_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0105200 LjG1.1_chr2 35540945 35553760 -
1 domain prediction
 –
LotjaGi2g1v0156500.1
n.a. OTU domain-containing protein; TAIR: AT3G57810.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810; TrEMBL-Plants: tr|A0A072VP60|A0A072VP60_MEDTR OTU-like cysteine protease; Found in the gene: LotjaGi2g1v0156500 LjG1.1_chr2 55569815 55574205 -
1 domain prediction
 –
LotjaGi3g1v0179500.1
n.a. OTU domain-containing protein; TAIR: AT2G27350.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5; TrEMBL-Plants: tr|G7IHG3|G7IHG3_MEDTR OTU-like cysteine protease; Found in the gene: LotjaGi3g1v0179500 LjG1.1_chr3 25007604 25014405 +
1 domain prediction
 –
LotjaGi3g1v0179500.2
n.a. OTU domain-containing protein; TAIR: AT2G27350.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5; TrEMBL-Plants: tr|G7IHG3|G7IHG3_MEDTR OTU-like cysteine protease; Found in the gene: LotjaGi3g1v0179500 LjG1.1_chr3 25007621 25014421 +
1 domain prediction
 –
LotjaGi3g1v0215900.1
n.a. OTU domain-containing protein; TAIR: AT2G38025.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810; TrEMBL-Plants: tr|I3TAS0|I3TAS0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0215900 LjG1.1_chr3 32416985 32422754 +
1 domain prediction
 –
LotjaGi3g1v0475100_LC.1
n.a. OTU domain-containing protein; TAIR: AT2G27350.1 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5; TrEMBL-Plants: tr|I1LRI6|I1LRI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0475100_LC LjG1.1_chr3 89180656 89186629 -
1 domain prediction
 –
LotjaGi3g1v0475100_LC.3
n.a. OTU domain-containing protein; TAIR: AT2G27350.3 OTU-like cysteine protease family protein; Swiss-Prot: sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A; TrEMBL-Plants: tr|A0A0B2S056|A0A0B2S056_GLYSO OTU domain-containing protein 5; Found in the gene: LotjaGi3g1v0475100_LC LjG1.1_chr3 89180656 89186629 -
1 domain prediction
 –
LotjaGi4g1v0102800.1
n.a. Protein translocase subunit SecA; TAIR: AT5G67170.1 SEC-C motif-containing protein / OTU-like cysteine protease family protein; Swiss-Prot: sp|B1AZ99|OTUD3_MOUSE OTU domain-containing protein 3; TrEMBL-Plants: tr|V7CF51|V7CF51_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0102800 LjG1.1_chr4 14239276 14248370 -
1 domain prediction
 –
LotjaGi5g1v0081000.1
n.a. OTU domain-containing protein; TAIR: AT5G03330.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757; TrEMBL-Plants: tr|A0A151TIX5|A0A151TIX5_CAJCA OTU domain-containing protein DDB-G0284757; Found in the gene: LotjaGi5g1v0081000 LjG1.1_chr5 13149723 13156661 +
1 domain prediction
 –
LotjaGi5g1v0145000.1
n.a. OTU domain-containing protein; TAIR: AT3G57810.2 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810; TrEMBL-Plants: tr|V7BM62|V7BM62_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0145000 LjG1.1_chr5 36655090 36661224 -
1 domain prediction
 –
LotjaGi5g1v0271900.1
n.a. OTU domain-containing protein; TAIR: AT5G04250.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757; TrEMBL-Plants: tr|I1NHH6|I1NHH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0271900 LjG1.1_chr5 58550797 58556534 -
1 domain prediction
 –
LotjaGi6g1v0035100.1
n.a. OTU domain-containing; TAIR: AT3G22260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757; TrEMBL-Plants: tr|I3S3E1|I3S3E1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0035100 LjG1.1_chr6 6593504 6599109 +
1 domain prediction
 –