Domain Predictions — View

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IPR003135

Source: InterPro

Description

IPR003135 is a ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type.

<p>The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0036439.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi\|356535191\|ref\|XP_003536132.1\|	Domains G3DSA:3.30.1490.20 G3DSA:3.40.50.20 IPR003135 IPR011761 IPR013815 IPR016185 PF02222 PS50975 PTHR11609 PTHR11609:SF5 SSF52440 SSF56059	12
Lj0g3v0076349.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi\|356535191\|ref\|XP_003536132.1\|	Domains G3DSA:3.30.1490.20 G3DSA:3.40.50.20 IPR003135 IPR011761 IPR013815 IPR016185 PF02222 PS50975 PTHR11609 PTHR11609:SF5 SSF52440 SSF56059 mobidb-lite	13
Lj0g3v0078859.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi\|356535191\|ref\|XP_003536132.1\|	Domains G3DSA:3.30.1490.20 G3DSA:3.30.470.20 G3DSA:3.40.50.20 G3DSA:3.40.50.7700 IPR000031 IPR003135 IPR005875 IPR011054 IPR011761 IPR013815 IPR013816 IPR016185 IPR016301 IPR033747 MF_01928 MF_01929 PF00731 PF02222 PIRSF001340 PS50975 PTHR11609 PTHR11609:SF5 SM01001 SSF51246 SSF52255 SSF52440 SSF56059 TIGR01161 TIGR01162 mobidb-lite	30
LotjaGi5g1v0211000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Formate-dependent phosphoribosylglycinamide formyltransferase; TAIR: AT2G37690.1 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase; Swiss-Prot: sp\|P55195\|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic; TrEMBL-Plants: tr\|K7LJS8\|K7LJS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211000	Domains G3DSA:3.30.1490.20 G3DSA:3.30.470.20 G3DSA:3.40.50.20 G3DSA:3.40.50.7700 IPR000031 IPR003135 IPR005875 IPR011054 IPR011761 IPR013815 IPR016185 IPR016301 IPR033747 IPR035893 IPR040686 MF_01928 MF_01929 PF00731 PF02222 PF17769 PIRSF001340 PS50975 PTHR11609 PTHR11609:SF5 SM01001 SSF51246 SSF52255 SSF52440 SSF56059 TIGR01161 TIGR01162 mobidb-lite	32

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00