Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR011127

Source: InterPro

Description

IPR011127 is a D-alanine--D-alanine ligase, N-terminal domain.

<p>This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme ([ec:6.3.2.4]) which is thought to be involved in substrate binding [[cite:PUB00014326], [cite:PUB00101159]]. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [[cite:PUB00000444]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0056779.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-alanine--D-alanine ligase [Medicago truncatula] gi\|357506461\|ref\|XP_003623519.1\|	Domains G3DSA:3.30.470.20 G3DSA:3.40.50.20 IPR000291 IPR011095 IPR011127 IPR013816 IPR016185 PF01820 PF07478 PS00843 PTHR23132 PTHR23132:SF0 SSF52440 SSF56059	14
Lj0g3v0056779.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-alanine--D-alanine ligase [Medicago truncatula] gi\|357506461\|ref\|XP_003623519.1\|	Domains G3DSA:3.30.470.20 G3DSA:3.40.50.20 IPR000291 IPR011095 IPR011127 IPR011761 IPR013816 IPR016185 NON_CYTOPLASMIC_DOMAIN PF01820 PF07478 PS00843 PS50975 PTHR23132 PTHR23132:SF0 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52440 SSF56059	21
Lj0g3v0056779.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-alanine--D-alanine ligase [Medicago truncatula] gi\|357506461\|ref\|XP_003623519.1\|	Domains G3DSA:3.30.470.20 G3DSA:3.40.50.20 IPR011095 IPR011127 IPR011761 IPR013816 IPR016185 NON_CYTOPLASMIC_DOMAIN PF01820 PF07478 PS50975 PTHR23132 PTHR23132:SF0 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52440 SSF56059	19
Lj1g3v2418700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-alanine--D-alanine ligase [Medicago truncatula] gi\|357506461\|ref\|XP_003623519.1\|	Domains G3DSA:3.30.470.20 G3DSA:3.40.50.20 IPR000291 IPR011095 IPR011127 IPR011761 IPR013816 IPR016185 NON_CYTOPLASMIC_DOMAIN PF01820 PF07478 PS00843 PS00844 PS50975 PTHR23132 PTHR23132:SF0 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52440 SSF56059	22
Lj1g3v2418700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-alanine--D-alanine ligase [Medicago truncatula] gi\|357506461\|ref\|XP_003623519.1\|	Domains G3DSA:3.30.470.20 G3DSA:3.40.50.20 IPR000291 IPR011095 IPR011127 IPR011761 IPR013816 IPR016185 NON_CYTOPLASMIC_DOMAIN PF01820 PF07478 PS00844 PS50975 PTHR23132 PTHR23132:SF0 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52440 SSF56059	21
LotjaGi1g1v0450300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-alanine--D-alanine ligase; TAIR: AT3G08840.2 D-alanine-D-alanine ligase family; Swiss-Prot: sp\|Q6MQ94\|DDL_BDEBA D-alanine--D-alanine ligase; TrEMBL-Plants: tr\|I1L754\|I1L754_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0450300	Domains G3DSA:3.30.470.20 G3DSA:3.40.50.20 IPR000291 IPR011095 IPR011127 IPR011761 IPR016185 NON_CYTOPLASMIC_DOMAIN PF01820 PF07478 PS00843 PS00844 PS50975 PTHR23132 PTHR23132:SF0 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52440 SSF56059	21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
SSF56059	SUPERFAMILY	1	16.67