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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2418700 |
| Transcript ID | Lj1g3v2418700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | D-alanine--D-alanine ligase [Medicago truncatula] gi|357506461|ref|XP_003623519.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| PANTHER | 4 | 387 | 384 | 2.20E-223 | – | |
| PANTHER | 4 | 387 | 384 | 2.20E-223 | – | |
| Phobius | 6 | 16 | 11 | – | – | |
| Phobius | 17 | 21 | 5 | – | – | |
| Phobius | 22 | 942 | 921 | – | – | |
| Pfam | 84 | 184 | 101 | 2.20E-14 | ||
| Gene3D | 84 | 184 | 101 | 8.00E-19 | ||
| SUPERFAMILY | 85 | 194 | 110 | 2.76E-18 | ||
| Gene3D | 189 | 295 | 107 | 4.20E-11 | ||
| SUPERFAMILY | 195 | 449 | 255 | 1.43E-19 | – | |
| ProSiteProfiles | 200 | 443 | 244 | 14.916 | ||
| Pfam | 214 | 442 | 229 | 5.40E-13 | ||
| Gene3D | 296 | 451 | 156 | 2.50E-27 | ||
| PANTHER | 404 | 493 | 90 | 2.20E-223 | – | |
| PANTHER | 404 | 493 | 90 | 2.20E-223 | – | |
| Gene3D | 482 | 522 | 41 | 5.70E-33 | ||
| Pfam | 483 | 655 | 173 | 1.40E-15 | ||
| SUPERFAMILY | 483 | 559 | 77 | 1.39E-20 | ||
| Gene3D | 578 | 655 | 78 | 5.70E-33 | ||
| SUPERFAMILY | 613 | 665 | 53 | 1.39E-20 | ||
| ProSitePatterns | 633 | 644 | 12 | – | ||
| Gene3D | 657 | 685 | 29 | 4.20E-24 | ||
| SUPERFAMILY | 716 | 919 | 204 | 9.77E-16 | – | |
| Gene3D | 806 | 919 | 114 | 4.20E-24 | ||
| Pfam | 807 | 912 | 106 | 2.20E-11 | ||
| ProSiteProfiles | 872 | 938 | 67 | 9.541 | ||
| ProSitePatterns | 877 | 906 | 30 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | D-alanine-D-alanine ligase activity | Catalysis of the reaction: 2 D-alanine + ATP = D-alanyl-D-alanine + ADP + 2 H(+) + phosphate. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj1g3v2418700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2418700.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.