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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0056779 |
| Transcript ID | Lj0g3v0056779.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | D-alanine--D-alanine ligase [Medicago truncatula] gi|357506461|ref|XP_003623519.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| PANTHER | 4 | 402 | 399 | 5.60E-244 | – | |
| PANTHER | 4 | 402 | 399 | 5.60E-244 | – | |
| Phobius | 6 | 16 | 11 | – | – | |
| Phobius | 17 | 21 | 5 | – | – | |
| Phobius | 22 | 919 | 898 | – | – | |
| Gene3D | 83 | 199 | 117 | 1.90E-28 | ||
| SUPERFAMILY | 83 | 209 | 127 | 4.78E-27 | ||
| Pfam | 84 | 199 | 116 | 2.70E-22 | ||
| Gene3D | 204 | 310 | 107 | 4.10E-11 | ||
| SUPERFAMILY | 210 | 464 | 255 | 1.45E-19 | – | |
| ProSiteProfiles | 215 | 458 | 244 | 14.916 | ||
| Pfam | 229 | 457 | 229 | 5.20E-13 | ||
| Gene3D | 311 | 466 | 156 | 2.30E-27 | ||
| PANTHER | 419 | 508 | 90 | 5.60E-244 | – | |
| PANTHER | 419 | 508 | 90 | 5.60E-244 | – | |
| Gene3D | 497 | 537 | 41 | 5.50E-33 | ||
| SUPERFAMILY | 498 | 574 | 77 | 1.30E-20 | ||
| Pfam | 498 | 670 | 173 | 1.30E-15 | ||
| Gene3D | 593 | 670 | 78 | 5.50E-33 | ||
| SUPERFAMILY | 628 | 680 | 53 | 1.30E-20 | ||
| ProSitePatterns | 648 | 659 | 12 | – | ||
| Gene3D | 672 | 700 | 29 | 1.80E-19 | ||
| SUPERFAMILY | 731 | 918 | 188 | 7.95E-12 | – | |
| Gene3D | 821 | 919 | 99 | 1.80E-19 | ||
| Pfam | 822 | 919 | 98 | 1.20E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | D-alanine-D-alanine ligase activity | Catalysis of the reaction: 2 D-alanine + ATP = D-alanyl-D-alanine + ADP + 2 H(+) + phosphate. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj0g3v0056779.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0056779.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.