Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR025778

Description

IPR025778 is a Histone-lysine N-methyltransferase, plant.

<p>Members of this family are polycomb group (PcG) proteins from plants. They act as the catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. These enzymes are also required to regulate floral development by repressing the AGAMOUS homeotic gene in leaves, inflorescence stems and flowers. They regulate the antero-posterior organisation of the endosperm, as well as the division and elongation rates of leaf cells. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development [[cite:PUB00057999], [cite:PUB00058000], [cite:PUB00058001], [cite:PUB00058002], [cite:PUB00058003], [cite:PUB00058004], [cite:PUB00058005], [cite:PUB00058006], [cite:PUB00058007]].</p> <p>Methyltransferases (EC [ec:2.1.1.-]) constitute an important class of enzymes present in every life form. They transfer a methyl group most frequently from S-adenosyl L-methionine (SAM or AdoMet) to a nucleophilic acceptor such as oxygen leading to S-adenosyl-L-homocysteine (AdoHcy) and a methylated molecule [[cite:PUB00057957], [cite:PUB00057958], [cite:PUB00054125]]. All these enzymes have in common a conserved region of about 130 amino acid residues that allow them to bind SAM [[cite:PUB00006319]]. The substrates that are methylated by these enzymes cover virtually every kind of biomolecules ranging from small molecules, to lipids, proteins and nucleic acids [[cite:PUB00057957], [cite:PUB00057958], [cite:PUB00006319]]. Methyltransferase are therefore involved in many essential cellular processes including biosynthesis, signal transduction, protein repair, chromatin regulation and gene silencing [[cite:PUB00057957], [cite:PUB00057958], [cite:PUB00054125]]. More than 230 families of methyltransferases have been described so far, of which more than 220 use SAM as the methyl donor.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component PcG protein complex A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure.

Associated Lotus transcripts 17

Transcript Name Description Predicted domains Domain count
PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max] gi|356540672|ref|XP_003538810.1| 16
PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max] gi|356540672|ref|XP_003538810.1| 16
PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] gi|356534774|ref|XP_003535927.1| 17
PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] gi|356534774|ref|XP_003535927.1| 17
PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] gi|356534774|ref|XP_003535927.1| 17
PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] gi|356534774|ref|XP_003535927.1| 17
Histone-lysine N-methyltransferase; TAIR: AT4G02020.1 SET domain-containing protein; Swiss-Prot: sp|Q8S4P4|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3; TrEMBL-Plants: tr|B9RNE0|B9RNE0_RICCO Histone-lysine N-methyltransferase; Found in the gene: LotjaGi2g1v0010500 18
Histone-lysine N-methyltransferase; TAIR: AT2G23380.1 SET domain-containing protein; Swiss-Prot: sp|P93831|CLF_ARATH Histone-lysine N-methyltransferase CLF; TrEMBL-Plants: tr|I1LHC7|I1LHC7_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi2g1v0403200 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.2 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU3|K7LGU3_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.2 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU2|K7LGU2_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.2 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU3|K7LGU3_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.1 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU3|K7LGU3_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.1 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU2|K7LGU2_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.1 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU2|K7LGU2_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.1 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU2|K7LGU2_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.1 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU3|K7LGU3_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 18
Histone-lysine N-methyltransferase; TAIR: AT4G02020.1 SET domain-containing protein; Swiss-Prot: sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1; TrEMBL-Plants: tr|K7LGU2|K7LGU2_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0244300 16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 5.88