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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0276600 |
| Transcript ID | LotjaGi6g1v0276600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit zeta; TAIR: AT1G60970.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2; TrEMBL-Plants: tr|I3TAJ3|I3TAJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59355177..59358189) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAGACTCATTTGACACTGGTTGAAGAAAAACATTCACTGAGTCTCAGAAGCTTCTCCTTCTTTCCTCCGTCGACGG TTTCTCCACCATGTCTCCTCCTCCCAATGTTGTAACCTCTCTCCTTCGACTTCGATTCTTACTGTTTTCAATTTTTCTGA ATCTTTCATACTCAGATCTTGATCGTCTTCACCACTTTGCTTGAACTTGATTTGCTGTTTTTCTTTGAATGCCATAGATC TAGCTTTGCTTATTCATTTTATTGTAGAACCCTGGAAAAATCACTTCCTATTGAATTTTTATTATGATTGAATTTTGTGA TGCAATTCCTGAAACAATGTATCTGTTTTCTTCATGTTTTGTGTGATTTTTGTCATTTTGATCTGATTGCAAAAGTGAAG CTGAAAGGTACAAACTTTGGTGTTTTGAAATTGACCCTTTTGCTCATTTGATCTAATGCTATGATTCTCTTGGTTGGCTT TAGAATTTGATAGGAATTGATTTGCAATTGTTGTTTGACTTGAATGTATCTGAATTGATTAATTGTTGTGTGAAGTTGGG ATATTTGTTTGTGTGCATGTACTTTGTATCCCTAAATTGATTGAATCACTGTGAAAAGAATGAGATTTTGAAAAGAAGTT TTTGTGGGGTGCTTTAAATTTGAGGAAAGTTGTGATCTTGTATTGTGTGATTTTGTTAGGAGTTATGCCCTTCTGTGAAG AATATCCTTTTGCTTGATTCTGATGGGAAACGTGTGGCGGTCAAGTATTTCTCTGATGACTGGCCAACCAATAGTGCACA GGAGGCTTTTGAGAAGCTTGTGTTCACCAAGACTCAGAAGACCAATGCCCGCACGGAAGGTGAGTGGAATGAGTGCTTCC AATCCTTATGTGGTTGGATTGGATTATTGGAATGGATTGCTAATCACTGTTCTTAAATGAATTTATTTGATGGGTTTTTA TTTTCAATTCGCAGCGGAGATAACAATGCTTGAGAATTACATTGTTGTTTACAAGTTTGTCCAAGATCTTCACTTCTTTG TTACCGGGGGTGACGAAGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTCGATTCTGTTGGCCTCCTGCTC AGGTTGTTTTCATGTACTTGAACATTTACATGTGTGTCTTGTACAATGGTGTTATCAATCTGTTGGTATTAACACAGTAG CCCTTGATGCTTTTGCTGGCTTCTCCCCTTCCCCCCTCCAGAGGCAATGTGGACAAGAAGGAAGCACTTGAGAACTTGGA TCTGATTCTTCTTTGCATTGATGAAATTATTGATGGCGGGTAAGCAAAATGCTATTCAGAATAAAACTATGCTCTTTGAA TTTCGTTGTTTATCTTCTTTAAAGAATTCTCTTATTCCCTGCACTTTTTCGAATTACAAATTGTAGGAGCTATTTGGTTT AGCATAGATACCAATTCTTTTCTGCAGTTGAATTATTGCAATTGTTATTTTCTTGACATGAAATCAAATACTGTTCTCTG AATTGTTATTCTGCTAAGAACGAACATAAATACCCTTATACCCGAGCTTGGAGCTTTCTAAGTTAATCACGTAACTCTTG AAGGCTATAAAGTATAAACGATCAAATGTTCAAGTAACAATTGGGCTTATCCATGTGATGTTACAAATGTGACTTGCATA AGTTTTATTAGCATCCTCAGCTACAGTAGAATCTGAATGCATGATATTTCTGTTGGAAATTGCTCTAAATTTCTCATAAG ACAACTTCTTCTTTTTCCCCTATTAAGCCAACCACATGCCCCTGATTGATTTGGCCCCATGATGATCTTGTCATTTGCCT TGTTCTTGAATGAAAAGATCTCATTTGGATCAAAACATTAAGTTTGGTTTTGGAATTTGGATGAAGTGATGAACACAAGG TTAATGCTTTTTCATTTTAAAGTATGGACAATCATGTACTAAGCCATACTTTCTCAAGAGTCAAGAGATCATGACTTAAC CATGTGTGACGTGACATAAATCGCATAAAGTTAATTATGTTGCTACTCAAATGTTTTTCCTCTAGGTTTCACGTGGGCTA AAAAGTACAGTAAGCGTAATTTGTTATCATAGGTCACTAGGTAGTTGGTAGCAGAACCCCTAACCTTGCCCTCAAATAAG TTTTCCCTCAGTTTACCCTTTCATACTGCTCTCTTTTTCTTGTTTTTATGCCTCTTATCTACCTTTGTCTTGGCTCTGCC ATGGTCTCACTCAAATTTCATGTGTCCATATTTGATGCAGTATCATTCTTGAAACTGATCCAAATGTGATAGCTGGGAAA GTGGCAAGTAATAGTATAGATTCTGGAGCTCCTTTATCTGAACAGGTATTTTACAATCATCACTTTGATACCAGAAAAGA AAACTGAATTGAAATTCACACATATGAGATGTAACTGTATTTCTTTCCTTTGCAGACACTAACTCAAGCATTGGCCACAG CCAGGGAACATTTTGCAAGATCCCTTCTTAAATGAACCACATATGAGATTTGGCAATGGATGAAACTTATCTTCTGGCTT TCCTAGAAAACGCTTATAAAGATATCAATTTACATTGCATTCTTGGATGATGATATTTACTTGGGTTGTGGAAATTAATT TTGACATGCGAATATAGGCTTTTTGGCACTCTTTTTCTTGCAACATTTTGTTGATGTAATTACCCATGAGATTTCAGGAT AATGGCATATGGCATATACTATATTTTTCTGAAATTTGTCAGAATCAATTTTAGTATGTATATTAGTTTTGAATTGACTT GAGTATGTTTTTCAGACCGGTAAAATTGACATTTTGATAGTCCCAGTAAAGTTTCGATTCGTTTTTAAACTTTATAATGA CAAAACAAATAAAATATTTATTGGGACTAATATCAATAATGACAAATTTTACAGTGACGGAAAAACATATTTAAGTCTTT TGAATTTTTGTATCATCTCACTTGATTAAAGATTCACAGATGGTGAAAATCGT
CDS sequence (LotjaGi6g1v0276600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCTCCTCCCAATGAGTTATGCCCTTCTGTGAAGAATATCCTTTTGCTTGATTCTGATGGGAAACGTGTGGCGGT CAAGTATTTCTCTGATGACTGGCCAACCAATAGTGCACAGGAGGCTTTTGAGAAGCTTGTGTTCACCAAGACTCAGAAGA CCAATGCCCGCACGGAAGCGGAGATAACAATGCTTGAGAATTACATTGTTGTTTACAAGTTTGTCCAAGATCTTCACTTC TTTGTTACCGGGGGTGACGAAGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTCGATTCTGTTGGCCTCCT GCTCAGAGGCAATGTGGACAAGAAGGAAGCACTTGAGAACTTGGATCTGATTCTTCTTTGCATTGATGAAATTATTGATG GCGGTATCATTCTTGAAACTGATCCAAATGTGATAGCTGGGAAAGTGGCAAGTAATAGTATAGATTCTGGAGCTCCTTTA TCTGAACAGACACTAACTCAAGCATTGGCCACAGCCAGGGAACATTTTGCAAGATCCCTTCTTAAATGA
Protein sequence (LotjaGi6g1v0276600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPPPNELCPSVKNILLLDSDGKRVAVKYFSDDWPTNSAQEAFEKLVFTKTQKTNARTEAEITMLENYIVVYKFVQDLHF FVTGGDEENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILLCIDEIIDGGIILETDPNVIAGKVASNSIDSGAPL SEQTLTQALATAREHFARSLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 152 | 147 | 7.5E-45 | – | |
| PANTHER | 7 | 182 | 176 | 3.7E-106 | – | |
| PANTHER | 7 | 182 | 176 | 3.7E-106 | ||
| SUPERFAMILY | 12 | 151 | 140 | 9.61E-29 | ||
| Pfam | 12 | 150 | 139 | 2.7E-23 | ||
| CDD | 13 | 148 | 136 | 2.25533E-63 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi6g1v0276600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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