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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0499100 |
| Transcript ID | LotjaGi1g1v0499100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit zeta; TAIR: AT4G08520.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3; TrEMBL-Plants: tr|A0A151SUF4|A0A151SUF4_CAJCA Coatomer subunit zeta-3; Found in the gene: LotjaGi1g1v0499100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101498809..101508327) extracted from Lotus japonicus Gifu genome v1.2.
CAAGATCTCAATTACTTACAAGTTACAACAGTTATGTATGTACATATGTCTCCTAAGCCAGACACTGTAACGTATTCTGT TTCTTGAAAATGGCATCCCATGTAAGTCTCTCTCTTTAAGTTCAAATTGTAATGGCTGAAATTTCTGCTACTTGTATCAA CTCTTTCATATTATTAATTTTCATAAATCCCCAAAGGTTGAAGCATGAATTCAACAACTTGTTTTTATTTGGTGGATGGA TCACCAAGTGATTTTGAAATTCAATAATGGTATATCTATAGATGAGATTTCAAATTCGAGATCCATGTATATTTCTATTC CAGATTCAGTTACAATGTTTGCTTAAAAACTTTACCAACATCAATTCATAAATATGTAAATTTGGGTTTTGATCATTTGT GGAAGCATTGTCCCTGCTTTTGTACGTGCTAAGAGAATTTATCATAAAAATAAAAAGATTTGTTTTTGTCTTGTTTGTTC ATAATTGAATCCTGCATCATTTGATTCTCTAGATCAAAAAGTACTCTGTATACGCGCATATGTTAGAATTTGGGTTAGGC TACCCTAAAAGCTAGTTTAGATGTGAAGATTGTCTTCCCAAATATAAGGGTTATCTTGGTCATATCTCTAGTTAATGTGA GACTTCTCAACAACTCCCGTATGCCCAGGAATGAATATTTTGGAGCGTGAAATTTGTTAGAATCATAGTAGTCAATCCCG GATAGCGGCGCATAGCGGTCGGCCCCTAAAGTGGGATAGCGGGATAGCGGATAGCGGGATGACCGCTATTTTGATTTTTT TAAATATAAATAACAGTTTAATTCAATATACATATAAATACTAAAACATGACAAATATTACTTAAAATTCATAACATTCA TAATACCTAATAGTCATAAGGTTTAAAAACTAAAGAAGTTCAAGCCTCCAAGATTTAAAACATGAAACAACAACATTGAA ATTTCAAATAAGAGTTACTAGACTCCTAGCTACATAAGAAATCATCAATCATCATCTTCTTCTAGCTCGGGATCCTCGTC ATTGTCACTTTCACTTGTGTCTGTGTGGTAGATTTCTTCCCCCACCTCCTCTTCCTCTTCACTTTCCAAATCAACTTCTT CTATCACCACCCCCTTGCCTCTTCTTTGTCCCCTCCCTCGGCCTCTAGTGGTTGAAGTTAAAGGCCTAGACCTAGTAGTA GAAGATGTAGTGGCAGCATCAATTCCCCTTCTTGATGTCCTCCTAGTATATGTCAAGGGCTCATCAACACCTCCTGCATT AGCAACATCTCCCCAAGTTAAGTCATCATCTTCAAAAACCAAATCATTTTCAGCATGTTCTTCTCCATCTCCACCCATTT CTCCCAACAACCACTCATTACTATCATCAATGCCATCTAGGACAATGGGGTCAGTGGCATCACGACAATCAAATTTTTCT CTAAGAGCTTGGTTGTATTTCACATAGACTAAATCTTGCAACTTTTGATGCTCAAGACGACTCCTCTTCTTTGAGTGAAT CTATATTATAATATAAAATAAATGTTAGTTTCATAATTATTTTATGAAATTCTAAAGTCTAAACTAATAATTTATAAAAA TAAATAAATAGAGTATTAACTTACATGCTCAAAGATACTCCAGTTTCGCTCACAACCGGATGAACTGCACGTCAAGCTTA GTACTTTAATAGCAAGTGCCGTCAAATGAGGAGTACTTTGTCCAAAGGACCTCCACCACTCAGCTACAATGATAATGCAA CATAAGTTTGTTCATGATGCTTGAAGATTTAATCTAAATATGGAGCATGATTCTCACTTACCAGGAGACATTGTTTTCCT TGCTCTTACAGCTTGTTTCTTTCCAAAGAAGCCTCCAGCCACCTTATACTCAGCCAATTCAAGCACAACTTTATCATTCA CTTCATCATTCTCACTAAGTACTTCGATACATTTGTAGACACCTTCCATGATTTCTAGATTACGATCCATATCCGGATTA TCATAAAAGTATTCCGGATTCAGAAAATGTCCCATAGCATGCAATGGATGGTGAAGTTGACATTCCCACCTATTATCAAT TATTGCCCAAATCTCCTTGTACTTGCTTTCATTTCCTTTAAAACCACTTTTAATAGCCTCCGTAGCCCTATCCATAGCTT CATATATGTAACCCATTGCCGGCTTCCTTTCATTATCAATAAGCCTTAGGACACCCACCAATGGCCCCATAGACCTAAGA CAATAAGCAACGTCATTCCAAAATGTGTTCATGAGAACCACATTTGCTGCCCCTTTCCCCTTAGTGACTTTAGCCAAGGT AGTCTTTGTCCAATCATCGGAAGTGAACATCTTTCTAAGGTTGTTTCTTTGAGTGTACAACCTTCGCAAAGTGAGAAATG TGGTGACAAATCTTGTAACTCCATTTCTAACCAATTCTGATTTGTTGGTGTACTTTCTCATGATGTTCAATGCCAAAGTA TGATTATAGAAAAAGCCAACAAGACTTATACCCCTTTTGATGGTCTTTTGAACTCTTTTAAGCTTGCCAATGTCTTCTAA GATCAAATCAATGCAATGGGCAGCACATGGAGTCCAAAATAAGTGCTTCTTCTTAGCTTGTAGAATTTTACCTAAGACCC AATTCCAAATTAAAAAATTGAAATGAGCAAGAGCAACACATTATCACTAACAAAGTAATTAACAAAGTAATAGTTAACGT CACATACCGGCCAATACATAATTGCTTCCGTTGTCGGTCACCACTTGCACAACATTCTTCTCACCAATCTCCTCAACAAG GTTGTCCAAAAGAGTGAATAACTTTTCTCCGGTCTTCATGTATGAAGATCCATCAACACTCTTGACAAACATAGATCCAG CTGGGCTATTCACTAGAAAATTTATCAAAGTCCTTTGCTTCCTATCCGTCCAAGCATCGGACATAATCAAGCAACCATAC TTTCCTCTCTCTTCCACATTTTTCTTCATCAAGTTTTCGGTGTATTCCAACTCCTTTTTTAGGAGGGGAACTCTCATCTC ATGATAGCTTGGAGCTTTCAAGTGAGGGCCATAGTTTCCAACGGCCTCAAGCATCAACTTGAAGCTCTTTGATCGCACAA CATTGAATGGAATGCTATTCCGAATAAAGAATCTAGCAATATATTGGATAGTCCTTGCTCTAGCTTCTTTATCACATGCA TTAATCATGCTTGTTTGCTTCTTAGCTTTTGTCAACTTCAAGCTTGTCTCAGGATCTCTCATAAAATGTAAATCCAAGGG GCCTTTAACATTTGGCTTCTTAGGAACAGCAGAGGAAGCCCTACTTGAACTTATAGGTCTTTTCCAACTTTTAATTGACA CAATTTCTTGCAAATCTTCCTCCTCTTCATCTTCATTCAATTCAATCAAGTGTTCTTGTTGCCCTTGTTTCTTAGCAAGA GCTTCCTTCAACAATAGAGCCACTTCTTCTGGAACTTTCATACATGAATTACAATCTCCCTTTTTTTTTCATTTGATGAC GTTTTGCCCTTGTAATTCCTCCTGAAGTTGTCACCCCACAGACATCACATGTTACTCTCTTCCTATCATGTGGATTCTTC AAGCTATTCCACTGCCATGCTATATCAATGTTGTCTCCTATAGGCTTGTAAATCCCATTTTCAGCCCGCTTGCAATTATT TACAACTTCACTGTGGTTTGGCTAGTCAGAAGGGGATGCCATGGCTGGTCAGAAATCAGAATAGGGAGTGAGCATTACTA AAACAGAGCATTATTGTAGTGAAGAGTCAGTGAGCACAAAACCAAAAATAGAAACAGAAAGAGGGGAAAGAAGAGGAAAA TGAAAAACAGAACAAAGCAAGTTAACACAACCAAAAATAGAAACAGAAAGAGGTGAAAGAAGAGGTAAACAAAAAACAGA GGGAAATAAGAGAAAAGTGGAAAAAAAAACATAGAGGGAAAGAGAGAAGAGGAAACCGAGAGAGAGAAGGAAGAAAACAA ACTAACCTCGTTGGTATGTCGCCGGAGAAGAAGCTCTCGCCGGAGAGCTTGTCGCCGGAGAAGGAGAGGCAGAGGCTGAA CGTACGAGCAAGGAAAAGAGGAAGAAGCAGAACGCGATTGAGTGAAACGGCGTGAATGAGAGAGTAAGGAAGAGAGGAAG AATAGAGTAGACCTAATTCCATTCAAATTACCTGTTTTGCCCCTGACTATAAAACTCCAACGGTTTAAAAATATGGGTTT TTCTGTCATTTACCGATTTGATCTGTTAGCGGCGCTACAGGCCGCGATTGTCCGCGATTTCGCCGCGATTGTCCGCGATT TCGCCGCGATTGGGCCGCGATTCGCGCCGCGACGGCCGCGACGCATTACCGCGACGCGATTTGTCAAGAATCACGGGGAG CAGCCGCTACGCGACGCGACGCCGCGATAGCGGCGCTATTTGCCGCTATTGACTACTATGGTTAGAATAAACGAGTGACA CTGACACACACACACACACATATATATATATATATATATATATGTGGTTTCGAATAAACAATTTAGGATATGTTCTGACG CCATCTTAAGATTTGAGTAAAGTCTAACGTAACTCTATCTCAAAAGCTAGCTTGGAAGTAAGGATTGTCTTCTCATATAT AAAAGCTATCTTGGTAATGTCTCTACTGAATTCAGCACCATGGTTCCCTACATTGAAATCCTTTATTTGACAATGCCATA ACCATATTCTTACCTCACAACATGGTAAGAACTGATATCAGACGACTGGACTTCATAAAAAAATTGTCTTACGGCCATGA ATCATGTAACTTAAAAAGATGTGCTGAACCTCACTTTTTACTTGCATTTTGCTTTTTATGCTTACCAATTTTGAATCTTT TAAAGCAATCTAAAGAGAGGGGAAGCTATTAAAATTTGTTTAAGGTATTGGCTATTAGCATTTTATGGTACTCTTTCATG GCTTATTGGTTTCTTGTTTCATCTGTAGGGATCATGTCCTTCAATAAAGAACATTCTTCTTTTAGACTCAGAGGGAAAGC GTGTGGCAGTTAAGTATTTTTCAGATGATTGGCCTACAAATAGCTCAAAACTAGCTTTTGAGAAATTTGTGTTCGGCAAG ACTATCAAGACAAATGCTCGCACGGAAGGTAACTAAGCATCATCGAGTTTAATAAGAAGAGTTTCATTCACTTTTATCTT GAAGTCAGTGTTACTCATGACACCAAGCTGATATATTGTTTCACATTATCTACAGCTGAGATAACACTACTCGACAACAA CATCATCATTTACAAATTTGCACAAGACCTGCATTTCTTTGTCACCGGAAGCGAAGATGAAAATGAGATCATTTTAGCTT CAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGGTATATTTGGATGGTACTTTTCAATCTAAATTTTTAA AATCGATGCTCTTTTACTCATCATGTTTCTGTCATGTATATTATGTTTTTGTACCATTTACAGGAACAATGTCGACAAAA GAGAGGCACTTGAGAACTTGGATCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGGTAAGCATTTGTTTTACTC ATAGTTTCTTATTTGCATAAAAAAAAATGACTCTTAAATGTTTTCTCCCTTGAAGGATGATACTTGAAACAAATGGACCA CTTATTGCTGAAAAAGTTACCTCACACAACATGGATTCTGATTCCCCTTTGTCTGAGCAGGTAATTTGAAAACTCTGTTT AGATTCTGTTGGTAATATATGGTTACTTTTCATGTTACATTAACAAGAGTCAAGAGACATGGCTTGCCATGTAGAGTTGA GGTTGCTAGACTTATAGCACTGTTTAAGTCAGTTTATCAGATTTAATTATTGTACCCAGAAGCTATTCACATAAATTTCT CACCAGAATTAATTTTAGCTTCTTCTACAAGGATTTCTAAACATACATTTATTTTTCATACTTTACTTTTGAGGACCACA AACAATTACTAACTCTTATTTTGAAAAGGTTAATTTTGTTGTATATAAATAAATTTTGATGGAGTATTCCTTTGATCTTC AATCTAATGATGAATTTCTGATATTGCAGACACTAACTCAAGCATGGGCTACTGCCAGAGAACATTTGACAAGGACCCTT TTAAAATGATGTTTGAGCACCATATCGCATTGAATGCTGTTATAGGGGTTTTTTGGTTCTGCATTTCTGGTTTTGTTTGT CTACATTTGAATGGATTAATTTATCCTAAATAACCATGTAGTGCCAAAAACATGGAGTGAAATAGTGTCATTGAATCAAA TTGAGAAAATAAATTTAGATAGCCACATCTGTACCAAGTAGTCGTCATTACTGCAAAGTGGAGATCATTCAGGGGAATCA GGAGATAGAACTGCATAAGCCATTGGATTTCAAAATGTAATTTCAACTGTTTTGCGCAATGGTAACATAGCATGATCTTT TACAGGTATATTTTGAACAGATACTTGGTAATATAAGGAAATCACACCACGATTTCTTAGTCTTTAGGTAGTTGGCAACA CACAATTAACTACTCAATCTATGTCTGGAAACATTAAAGCATTGCATTTGTTCCTACATGGAGACTGATTGGGACTGATC TGCGTATCATGGCCAACCTTACTAATGCAATGTTGGTCACAACCTGAGATACCAGGCCGGGAAGAGGCATGATAAGCCCC CCGTCGGTGCCCTGGATTGTTCTCACCCCTACTCCTCTTTATGGTGACGATCAGGCTTCATGAGGGAACAAGTTTTCCTT ATTTCTCAGGTTGCGACGAACATTGCACTCAGTAAGGTCGGTCGTGCTTCGCACATCATTTCTAGTCAGTCACCATGTAG GAAAAAATGCCTTCCAAAGAAGAGAAATCAAACTTCATTCGATTGTGTAGGGCAGCTTCACAGTCAATCTGTGGTACATA CAAAGTTCAATTAAATTCCAAAAGAAACTTAATATCATGTGAACCTTTCTCCTTGACAGTCACAACCACTAGTGCTGCAA AAACATAGAATTGGGTGGTCCATCTTGACAATTCGTGAAATAAATTACAAAATTTAGCTCTAGAAAACTTACTTGGTAGA AAGCTGAAGCATATATCTGATACAAATGCCCTTTTACCTAATGCCCTTTTACCTTGAAACAAGGACTAGCAGAAGTGCAT CAATACACTGGCCTAAACCTCCATTTGATTATTAAAATATCAACAATGAGATTGAACTCTAAATCACTTGCTCAGAAAAA CATCACTGATCACGGAAGGAGATGAATTTAACTTCATCCATTAATAACCAAGGTTTTAAATTGGGTTGCGATAAACGGTC ACATCATGGTTGCAGTCCTTCATATTGCAGAGCTGTCCCGGCCGAAATCACAGTCGCGTTGCGGGTTCGGAAACCTTCCA AACCTTGATGTTGCAGCTGAATTCACTGTCACAGACGTTGATTAAAAACCATGCATTCAACTGCCAATGGTCAAAATAGA CTGGACTGCCTCCAGATAAACTTAAAATATTTAGGTGGCCTGGTCAAATGTAAATGTTGTCACTTGAGATATTGAACTAA TGAAGTAGCAATCTGTAGGAGTAAAGGTTCAAATATCCACGATAAGGGTACATGCGTGAGAATATTGGTATTCTAAAGGA CCTCCAAGAACATGAAGACATGATTTTAATCAACATAATGTCTCCAAAGACTTCTCTTTGATGTATGCCAAATTAACAGA CCCTAAAACATTCAATCTTAATTTAAAGAAATATACAGGTTAATAATACACAGGAAAGTTTCCCCAAAATCAGGTTGCAA CAGTTATATTTGAAACTAAAATGATGCTACACTTTAACTTTCAAGTTAGAACTACCAGTAGCATGACCTTTAGATGGTGG TAATACACTTAGCAAATTTTTAATCATCTGGTCAAGCTCCTTCAACTTGTCAATATCACCAGATTGCAGTAAAAACCTCT CCAACATTAGAAATGATGCAGCACTCATATGTCTTCCTCTCTCCAACATTTGTTTGGAGCACTCAAATGCTTCATGCACC TGACCCCTTGAACATAATCCAGTGATCAAAAGATCTAAAGCATGAGCATGAGGACAATACCCTTTCTCCACCAGGTAATT CCATAAACTAAGACTTAAATCTAGCCGAAAATTTTGACAGAAATATTTCATCAGCATCACAACTGTCCTTGTTTGCGGAA CAAAATTCCTCTGAGCCATCTTCTGGTAAAGCTCACTCACACCTTCAATTCCTGTGGACCTCATTAATCCTAAGAACATC GTATGATAAGTTACGCCGTCGAGCTCAACGCGTTTCTCAATCATCTCATCCATCAAGGAAAGTGCAGATTCAATATCTTT ACTTCTAAGCAATGCAGTAATTAAAGCATTATAAACACCAGTATCAACAACCAAGTTTCGCGAAGGAATCTCGTTGAACA ATTGCCGCGCCTTCCCTGCGTTTTGAACAATCCCTGCTCCGTGAATCAATGTAGTTATCGTTTCGATGGTAGGAACAAAT TTTCTACGTTCCATCTCCTCCAAAAGCCTCAAACCATCACCGAATCGACCTTTCTTACAGTAAGTATCGATCCTAATATT ATAAGTCACATTATCAGGACTAAAACCACGCTTAACCATTTCATGATAGAAGAGCTCAACAGAAGTAACATCACCTGATT CTTTAAAACCCAAGAGCAAAATGTTCATGCTCTTGGTGTCAGGACTAAACCGCGACACCATCTTCCCGAACACGGACCTA GCCTCCTTCATCTGCCTCTGACTGCAAAAAGCTTTGAGAAGCACATTGAACTCATCAGTGCCAAATTCCCTGCCAACAAA CACATCCTCCTCCATCCTCCTAAACCCATCAAGGGTATCCTCAAAAGATTGGTATTTTGCAATTTTTGAAAGCATGATGC TCATTGCCTTAAGGGTAATCAAAGAAGGGTGGGTCCTGGCGGTTTCTTGCAGCAACATCCAAGCTTTATCGAAATACCGC ATCCTAGTGAGGATGTGGAGGGTCATTTCGAATGAAACATGAGATGGGGGGGACTGGGAATGGTGGAGGGTGAAGTTGAA AAACTCCAGCGCCTTGAGGCCATTGGAATGGGAAGCGAACAAGCGACCAAGAACGTTTTCAACTAAGGAAGTGGAGATGG TGGGAGGAGGGAGGTGGCGGAGGAGAGTGGGGTGGAGGGGTTGGTCAGGGAAAGGGTGGTCGTTGATGATTCTGGTGATG GTGTCTGTGTCAGGTGTGAGACATGATTGAGAGCAGAAGTTGAATGTGGAACACCATAGGTACGAGGTTGTCGTGTGGGG AATGTGAGTGTGATTCTGTTTCAGCCTGAAAAGCAATGTGAGCATTGTTGTGATGGTGAGAAGAGACACACCATGTGTGT GTTTTCAACTTTGAAACACAGAGATCGCCAACGAAACAGAGCACACCAAGGTTTTTGCTTTAGGAAAGCTAGGGATCTG
CDS sequence (LotjaGi1g1v0499100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCCATGGATCATGTCCTTCAATAAAGAACATTCTTCTTTTAGACTCAGAGGGAAAGCGTGTGGCAGTTAAGTA TTTTTCAGATGATTGGCCTACAAATAGCTCAAAACTAGCTTTTGAGAAATTTGTGTTCGGCAAGACTATCAAGACAAATG CTCGCACGGAAGCTGAGATAACACTACTCGACAACAACATCATCATTTACAAATTTGCACAAGACCTGCATTTCTTTGTC ACCGGAAGCGAAGATGAAAATGAGATCATTTTAGCTTCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAG GAACAATGTCGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGGA TGATACTTGAAACAAATGGACCACTTATTGCTGAAAAAGTTACCTCACACAACATGGATTCTGATTCCCCTTTGTCTGAG CAGACACTAACTCAAGCATGGGCTACTGCCAGAGAACATTTGACAAGGACCCTTTTAAAATGA
Protein sequence (LotjaGi1g1v0499100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASHGSCPSIKNILLLDSEGKRVAVKYFSDDWPTNSSKLAFEKFVFGKTIKTNARTEAEITLLDNNIIIYKFAQDLHFFV TGSEDENEIILASVLQGFFDAVTLLLRNNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHNMDSDSPLSE QTLTQAWATAREHLTRTLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 180 | 180 | 1.1E-109 | – | |
| PANTHER | 1 | 180 | 180 | 1.1E-109 | ||
| Gene3D | 3 | 150 | 148 | 2.3E-41 | – | |
| SUPERFAMILY | 10 | 151 | 142 | 1.19E-27 | ||
| Pfam | 10 | 151 | 142 | 1.9E-21 | ||
| CDD | 11 | 146 | 136 | 3.6085E-68 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi1g1v0499100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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