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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0422300 |
| Transcript ID | LotjaGi3g1v0422300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit zeta; TAIR: AT3G09800.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83109651..83111893) extracted from Lotus japonicus Gifu genome v1.2.
TATATGTGCAGGGTATTTGTGATCAATGAATTGAGTCCTCCTTTCGTGACTTGTTGCTATTTTGTTCCATCTGTAGGGCC AGTGTCCTTCGATAAAAAATATTCTTCTTTTAGATTCTGAAGGGAAGCGTGTGGCGGTCAAGTATTACTCAGATGACTGG CCAACAAACAATTCAAAGTTAGCTTTCGAGAAGTTTGTATTCAGTAAGACTCTTAAGACAAATGCTCGGACAGAAGGTAA GCAGCAGAGTTTGACAAGCACATCACAATATGAAGTCACTTAGTTTTATATTGGGTGCTTGTGTCCTAGGCGTGGTGGCT ATAGCAATTTAACATGATCCTTGACGTAATGGATGTAATTGTGTTTATATGTTATTCTACCATGCATAAACCTTTTATTT ATAGGCATTCATGCTTTGTAGTTCTATTTACTTGCACTTTAGAGCTAATTATTAACCTCATTAAAAAAAGTCATAATGTT GCCTTGGAGTTGGATTAATAACTACATTGAAGAGTTTCTGGAACTTCTTTTCTATAACATGGACGAAGGTAGATCTTGTG TTTCTCGTGGTCTCATCAGTTGGTGTCTTGCATCAATATGAAAAATAGTTGAGTGAAGTCTTTTGAAACAATAATATGAG CCAGCATTTCTGCCTGGTGTGCATTACAAGTTTAGAAATGCATTGGATCATTATTTACTTCAGCCGTGCATTCCTCTCTG ACATTGCCTGACAGTTCAAAGGCCTCCATATAATATTCAAACATCCTTGTTTGTTAGCATATTAGCAAAAAAGTAATGCT TGAAAAAGCCTGTGTTTGAATGTATCAAAATTTTCAGGTCAGCTATAGTACTAAACATGTAATATTTTGTTTTGTCCCTT TGATTTATATTTATATTAATTGATAAATAGTATTGTTCACTTGTAGTGGTAACAGTAGCCTGCTATACTGATTTCCAACT TTTTTTTTTGGGATAGGCTACTGATTTACAACTTACGATGGGAACACCCCTAAACCTTAGGCAGGGCCAGGAATATTTTT CCATAACTTGTACCAAATGTGGGAATTTTGTGTTCCCATGCTTACTTTCCCAGGAAAATTTCATGATATCTTAAAACAAA CACACTCTTATAAGTTATATGTCTAACACTTATTAATGGTGTTATTTTTATCGCAGAAGTGCAAACTTTTATCAGCAGTA TTGGTTATCATGTTTCTTTTAAAACTAATATATCGTTACATGCAGCTGAGGTAACACTACTTGAGAACAATATCATTATT TACAAATTTGTGCAAGACCTGCATTTCTTTGTCACTGGTGGTGATGATGAAAATGAACTCATTTTGGCATCAGTTCTTCA AGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGTAGTTTTGGTTGTATTATTCTATCTGGATTTAAAACCAGATGCTTC TTTACTCATCATGTTTTGTTTCGTTTATTACTTTCTGTGCCTTACAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAA TTTGGACCTCATTCTTTTATGTCTTGACGAGATTGTTGACGGAGGGTGCGCATATATTTCTTTGCTTCAAATTGTCTTTT GTTTGCTGTATTCTTTTTCGTCAATAATAGTTAATTTTTTGCTTGAAGGATAATACTTGAAACAAATGGACCTCTTATTG CTGAAAAAGTGACCTCCCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGGTAATGCAACACTCTTTCAGCTTAGTT TCTGGTATTGATGTGTGCTTTTTTATATTTTAAAAAATTTGCCTGATAGAACATAGGTGCTACTGTAAGATTATTTGTCA AACTTACATAAGTTACATTACGCTTGATCAGTGTTATCAAATAGCGGCTATAGCGGCGCCATAGCTAGCGGATTTTTGGC TAATCGCGACGCCGGTATTGCCCGCTATAGCGCGCTATTTCCGCTATTCGCTGCCAAATAGCGGCTAAAATAGCGGATTT TTGGCTCACCGCGATGGTCCGCGATTTGATAACACTGCGCTTGATAGCAATTATGTAACAAACACTTTTGCTAGCCCAGT TTTGAATCACCTTTGACTTTTGATGGATCAAATAATTAAATTTTAGAATCACTATGAAATGTTTCTTGATCTTTAATCTG AAAGTGAGTTTCTGATGTTGCAGACTCTAACTCAAGCATGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAA TGA
CDS sequence (LotjaGi3g1v0422300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAGGGGCCAGTGTCCTTCGATAAAAAATATTCTTCTTTTAGATTCTGAAGGGAAGCGTGTGGCGGTCAAGTATTA CTCAGATGACTGGCCAACAAACAATTCAAAGTTAGCTTTCGAGAAGTTTGTATTCAGTAAGACTCTTAAGACAAATGCTC GGACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTGCAAGACCTGCATTTCTTTGTCACT GGTGGTGATGATGAAAATGAACTCATTTTGGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGAG CAATGTTGACAAAAGAGAGGCACTTGAGAATTTGGACCTCATTCTTTTATGTCTTGACGAGATTGTTGACGGAGGGATAA TACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCCCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAG ACTCTAACTCAAGCATGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA
Protein sequence (LotjaGi3g1v0422300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCRGQCPSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEVTLLENNIIIYKFVQDLHFFVT GGDDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGIILETNGPLIAEKVTSHSLDADAPLSEQ TLTQAWATAREHLTRTLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 149 | 146 | 1.1E-41 | – | |
| PANTHER | 4 | 179 | 176 | 6.4E-110 | – | |
| PANTHER | 4 | 179 | 176 | 6.4E-110 | ||
| SUPERFAMILY | 9 | 150 | 142 | 2.15E-28 | ||
| Pfam | 9 | 148 | 140 | 1.1E-21 | ||
| CDD | 10 | 145 | 136 | 6.43439E-69 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi3g1v0422300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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