Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

MF_01478

Source: Hamap

Description

50S ribosomal protein L12 [rpl12].

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006414
Biological process Translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
Subterm of
Part of

Associated Lotus transcripts 15

Transcript Name Description Predicted domains Domain count
Lj0g3v0062259.1
– PREDICTED: 60S acidic ribosomal protein P2-4-like [Cicer arietinum] gi|502122169|ref|XP_004497613.1|
Domains
11
Lj1g3v1063580.1
– PREDICTED: 60S acidic ribosomal protein P1-like [Cicer arietinum] gi|502177934|ref|XP_004516146.1|
Domains
6
Lj1g3v4703000.1
– PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis sativus] gi|449521190|ref|XP_004167613.1|
Domains
11
Lj1g3v5060560.1
– PREDICTED: 60S acidic ribosomal protein P1-3-like [Cicer arietinum] gi|502114115|ref|XP_004494866.1|
Domains
6
Lj2g3v1196740.1
– PREDICTED: 60S acidic ribosomal protein P2B-like [Cicer arietinum] gi|502083624|ref|XP_004487515.1|
Domains
12
Lj2g3v3260030.1
– PREDICTED: 60S acidic ribosomal protein P1-3-like [Cicer arietinum] gi|502114115|ref|XP_004494866.1|
Domains
6
Lj3g3v1145920.1
– PREDICTED: 60S acidic ribosomal protein P2B-like [Cicer arietinum] gi|502083624|ref|XP_004487515.1|
Domains
12
LotjaGi1g1v0295700.1
– 60S acidic ribosomal protein P1, putative; TAIR: AT5G24510.1 60S acidic ribosomal protein family; Swiss-Prot: sp|O23095|RLA12_ARATH 60S acidic ribosomal protein P1-2; TrEMBL-Plants: tr|A0A072VJD3|A0A072VJD3_MEDTR 60S acidic ribosomal protein; Found in the gene: LotjaGi1g1v0295700
Domains
8
LotjaGi1g1v0678000.1
– 60S acidic ribosomal protein P2; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp|O24415|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr|I3T179|I3T179_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0678000
Domains
14
LotjaGi1g1v0796600.1
– 60S acidic ribosomal protein P1; TAIR: AT5G24510.1 60S acidic ribosomal protein family; Swiss-Prot: sp|Q8LCW9|RLA11_ARATH 60S acidic ribosomal protein P1-1; TrEMBL-Plants: tr|I3SWN8|I3SWN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0796600
Domains
9
LotjaGi2g1v0286700.1
– 60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp|Q9LXM8|RLA24_ARATH 60S acidic ribosomal protein P2-4; TrEMBL-Plants: tr|I3SKJ7|I3SKJ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0286700
Domains
14
LotjaGi2g1v0286700.2
– 60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp|Q9LXM8|RLA24_ARATH 60S acidic ribosomal protein P2-4; TrEMBL-Plants: tr|I3SKJ7|I3SKJ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0286700
Domains
14
LotjaGi2g1v0425400.1
– 60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp|O24415|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr|I3SVC6|I3SVC6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0425400
Domains
14
LotjaGi3g1v0174800.1
– 60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp|O24415|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr|A0A072VLF0|A0A072VLF0_MEDTR 60S acidic ribosomal protein; Found in the gene: LotjaGi3g1v0174800
Domains
14
LotjaGi5g1v0093000.1
– 60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp|O24415|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr|I3SVC6|I3SVC6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0093000
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 6.67