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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0678000 |
Transcript ID | LotjaGi1g1v0678000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | 60S acidic ribosomal protein P2; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp|O24415|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr|I3T179|I3T179_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0678000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124457830..124459491) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAAACAAAGCCCGAACCGTTCATCTTTCTTTGTAGTGCCGAAACAAACCCTAACCCTATTTATCAAATTACAGAACA CAAAAACCCTTCGCTTCGTTTCTCCTCACTCACCAATCGCACATTGTGAACACAGAGACTCACATTCTCGTGTGCAAGAT GAAGGTGATCGCAGCCTACTTGCTCGCCGTGTTGGGAGGTAACACAGCCCCTTCTGCCGACGACTTGAAGAGCATCCTTA GCTCCGGTAACCGCCATTTTTCAATGGTTTATTTGTTCAGTGACGTGAATTTTAAGATTTTCGGTGATTTTGATGTGATT TTCGAATTGTTGTTGATTTTCAGTTGGAGCTGATGCGGATGATGAGAAACTCAGTTTTCTCTTGTCTGAAGTGAAGGGTA AGGATCTCGCTGAGGTTATTGCCTCCGGTAGGGAGAAGTTATCCTCAGTTCCTTGCGGTGGTGGTGTTGCCGTTGCTGTG TCTGCTGCTCCGGGAGGTGGCGGTGGTGGTGCTGCTCCAGCTGCAGCTGAATCGAAGAAAGAGGAAAAGGTGGAGGAGAA GGAGGAATCAGATGATGTAAGTGTTCTTGTTCATTTTAATGTAAAAATGTTTTTAACATTGCTATGAGCATATTTTAATG ATTTCATGCTATGTGATGGAAACAGTTTTGAACTTGTTGTTGGTTGAACATGGATTAAACATGATCTTTATGATGCTGCT TCCATTTTTATTGTTTTTTGAAATTGGTTTCTCACTGGTTCTATTGTTGATTTGTTTTGTGGTGCAGGACATGGGTTTCA GTCTCTTTGATTAGATGGTAGGCTGTTCGAACATTTCTTCGGAATACATTCTCAATCTAGAGCTACTTAGTCTTTTTCAT TTCTTGGTTAATGTTGTGACAATGATCAATGTGGTTGAAAGAATTTTGTTAAATATTGTTTGCATTCATCAAGTTATGAA GATTTTTCAATTTGATCACCACTTTAGCTTTTCCTTTTGACTGTAGACATTTCCTTTATTGAATTTCATTTTGTGTAGTA TCAAGCATTTTGTTGGTGTTAGTGATGCTGATTACTGAACAAAAATGCCAAAGTAGTAGAGGCATAAACCTTTTCTTTAT TGAAAACATTGCATCTAATGTCAGGAAGCTTTTCCATGCCTCCTCTTAGTGCTTCCATCTTATCATTGACCAAGTGTAAT AGAATATCACATCATCACAGATAGTAACAAGTTCTAAAATTTACATTTTCGTGATCAACAATTTACTATTTCCTAATCGA TTTAAAGGCAAAGGTCAATAGACCTCTTTGTTATTCTTATACTGTCTTACAAAATTTTGTTTGAGGCCTTGTTTACTACT TTAATACTAGTATGTCACGTATAAGTGTGAGAAGGTGTGATGGGTAGTCATCAAGTAGTTAGTTCTGATAGGTTCAAGGT ACTTTGAAATGAAATGATTGTTCATGACTTCATGTCTTGAAGCATGAAAGCTAACCCACTGCTGTTAAGGACCACAAGGT CTGTAGATACGGCAAACAGTTTGCTAGAGAAATGTCATCATTTCAATATATTGTTTTTTCTTTGTTTGTTATCGAATGAA ATTTATTTCGATCTTGTTATCTCGATGAGCTTCGCTAAATTATATGGATCTTTCTATCAACA
CDS sequence (LotjaGi1g1v0678000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTGATCGCAGCCTACTTGCTCGCCGTGTTGGGAGGTAACACAGCCCCTTCTGCCGACGACTTGAAGAGCATCCT TAGCTCCGTTGGAGCTGATGCGGATGATGAGAAACTCAGTTTTCTCTTGTCTGAAGTGAAGGGTAAGGATCTCGCTGAGG TTATTGCCTCCGGTAGGGAGAAGTTATCCTCAGTTCCTTGCGGTGGTGGTGTTGCCGTTGCTGTGTCTGCTGCTCCGGGA GGTGGCGGTGGTGGTGCTGCTCCAGCTGCAGCTGAATCGAAGAAAGAGGAAAAGGTGGAGGAGAAGGAGGAATCAGATGA TGACATGGGTTTCAGTCTCTTTGATTAG
Protein sequence (LotjaGi1g1v0678000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGREKLSSVPCGGGVAVAVSAAPG GGGGGAAPAAAESKKEEKVEEKEESDDDMGFSLFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
CDD | 1 | 115 | 115 | 3.0408E-34 | – | |
Phobius | 1 | 2 | 2 | - | – | |
PANTHER | 1 | 115 | 115 | 1.8E-56 | – | |
PANTHER | 1 | 115 | 115 | 1.8E-56 | – | |
Gene3D | 1 | 59 | 59 | 2.1E-26 | ||
Hamap | 2 | 115 | 114 | 16.783 | ||
Phobius | 3 | 14 | 12 | - | – | |
Phobius | 15 | 19 | 5 | - | – | |
Pfam | 18 | 114 | 97 | 4.1E-23 | – | |
Phobius | 20 | 115 | 96 | - | – | |
MobiDBLite | 80 | 115 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
Expression pattern of LotjaGi1g1v0678000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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