Domain Predictions — View

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PF12169

Source: Pfam

Description

DNA polymerase III subunits gamma and tau domain III

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003887 View details of GO:0003887 AmiGO InterPro QuickGO	Molecular function	DNA-directed DNA polymerase activity	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.	Subterm of GO:0034061

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj4g3v0037530.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Trichome branching-like protein [Gossypium arboreum] gi\|395399800\|gb\|AFN58239.1\|	Domains Coil G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF0 SM00382 SSF48019 SSF52540 TIGR02397 cd00009 mobidb-lite	19
Lj6g3v1971250.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma/tau [Medicago truncatula] gi\|357447087\|ref\|XP_003593819.1\|	Domains Coil G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR008921 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF16 SSF48019 SSF52540 mobidb-lite	14
LotjaGi4g1v0002600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit; TAIR: AT2G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp\|O64728\|STI_ARATH Protein STICHEL; TrEMBL-Plants: tr\|I1KNQ8\|I1KNQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002600	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF49 SM00382 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	19
LotjaGi6g1v0319100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP0\|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr\|I1M1Q6\|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF46 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	17
LotjaGi6g1v0319100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP0\|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr\|I1M1Q6\|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF46 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00