Domain Predictions — View

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cd18137

Source: CDD

Description

HLD_clamp_pol_III_gamma_tau

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0230800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP8\|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr\|A0A151RVR2\|A0A151RVR2_CAJCA DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi1g1v0230800	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF54 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	15
LotjaGi4g1v0002600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit; TAIR: AT2G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp\|O64728\|STI_ARATH Protein STICHEL; TrEMBL-Plants: tr\|I1KNQ8\|I1KNQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002600	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF49 SM00382 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	19
LotjaGi4g1v0225500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP8\|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr\|A0A0B2RQ22\|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500	Domains G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF54 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	14
LotjaGi4g1v0225500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP8\|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr\|A0A0B2RQ22\|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500	Domains G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF54 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	14
LotjaGi6g1v0319100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP0\|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr\|I1M1Q6\|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF46 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	17
LotjaGi6g1v0319100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP0\|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr\|I1M1Q6\|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF46 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	16.67