Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF13177

Source: Pfam

Description

DNA polymerase III, delta subunit

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0102289.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: replication factor C subunit 3-like [Glycine max] gi\|356511754\|ref\|XP_003524588.1\|	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR027417 PF13177 PTHR11669 PTHR11669:SF1 SM00382 SSF48019 SSF52540 cd00009	13
Lj1g3v0295860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma/tau [Medicago truncatula] gi\|358348981\|ref\|XP_003638519.1\|	Domains Coil G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF3 SSF48019 SSF52540 TIGR02397 cd00009 mobidb-lite	15
Lj4g3v0037530.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Trichome branching-like protein [Gossypium arboreum] gi\|395399800\|gb\|AFN58239.1\|	Domains Coil G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF0 SM00382 SSF48019 SSF52540 TIGR02397 cd00009 mobidb-lite	19
Lj4g3v0047620.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Trichome branching-like protein [Gossypium arboreum] gi\|395399800\|gb\|AFN58239.1\|	Domains G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR003593 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF0 SM00382 SSF52540 TIGR02397 cd00009 mobidb-lite	13
Lj4g3v1389300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma/tau [Medicago truncatula] gi\|357477253\|ref\|XP_003608912.1\|	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF3 SSF48019 SSF52540 TIGR02397 cd00009 mobidb-lite	14
Lj6g3v1971250.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma/tau [Medicago truncatula] gi\|357447087\|ref\|XP_003593819.1\|	Domains Coil G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR008921 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF16 SSF48019 SSF52540 mobidb-lite	14
LotjaGi1g1v0230800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP8\|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr\|A0A151RVR2\|A0A151RVR2_CAJCA DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi1g1v0230800	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF54 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	15
LotjaGi2g1v0111100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp\|Q8VXX4\|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr\|I3SC80\|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR027417 PF13177 PTHR11669 PTHR11669:SF1 SM00382 SSF48019 SSF52540 cd00009 cd18140	14
LotjaGi2g1v0111100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp\|Q8VXX4\|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr\|I3SC80\|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR027417 PF13177 PTHR11669 PTHR11669:SF1 SM00382 SSF48019 SSF52540 cd00009 cd18140	14
LotjaGi2g1v0111100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp\|Q8VXX4\|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr\|I3SC80\|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR027417 PF13177 PTHR11669 PTHR11669:SF1 SM00382 SSF48019 SSF52540 cd00009 cd18140	14
LotjaGi4g1v0002600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit; TAIR: AT2G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp\|O64728\|STI_ARATH Protein STICHEL; TrEMBL-Plants: tr\|I1KNQ8\|I1KNQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002600	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF49 SM00382 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	19
LotjaGi4g1v0225500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP8\|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr\|A0A0B2RQ22\|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500	Domains G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF54 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	14
LotjaGi4g1v0225500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP8\|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr\|A0A0B2RQ22\|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500	Domains G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR027417 PF13177 PTHR11669 PTHR11669:SF54 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	14
LotjaGi6g1v0319100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP0\|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr\|I1M1Q6\|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF46 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	17
LotjaGi6g1v0319100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA polymerase III subunit gamma; TAIR: AT4G18820.1 AAA-type ATPase family protein; Swiss-Prot: sp\|F4JRP0\|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr\|I1M1Q6\|I1M1Q6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0319100	Domains Coil G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR008921 IPR012763 IPR022754 IPR027417 PF12169 PF13177 PTHR11669 PTHR11669:SF46 SSF48019 SSF52540 TIGR02397 cd00009 cd18137 mobidb-lite	17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.67