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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0037530 |
| Transcript ID | Lj4g3v0037530.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | trichome branching-like protein [Gossypium arboreum] gi|395399800|gb|AFN58239.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 25 | 77 | 53 | – | – | |
| MobiDBLite | 93 | 126 | 34 | – | – | |
| MobiDBLite | 161 | 180 | 20 | – | – | |
| MobiDBLite | 261 | 280 | 20 | – | – | |
| MobiDBLite | 402 | 421 | 20 | – | – | |
| PANTHER | 459 | 837 | 379 | 4.70E-268 | – | |
| PANTHER | 459 | 837 | 379 | 4.70E-268 | – | |
| TIGRFAM | 472 | 822 | 351 | 6.40E-113 | ||
| Gene3D | 483 | 636 | 154 | 3.20E-48 | ||
| CDD | 486 | 645 | 160 | 2.00E-08 | – | |
| Pfam | 487 | 648 | 162 | 5.70E-32 | – | |
| SUPERFAMILY | 496 | 695 | 200 | 5.34E-43 | ||
| SMART | 504 | 659 | 156 | 0.0018 | ||
| Gene3D | 637 | 711 | 75 | 3.90E-23 | – | |
| Pfam | 702 | 823 | 122 | 3.40E-08 | ||
| Gene3D | 712 | 822 | 111 | 2.40E-06 | – | |
| SUPERFAMILY | 719 | 820 | 102 | 3.83E-06 | ||
| Coils | 784 | 811 | 28 | – | – | |
| MobiDBLite | 825 | 878 | 54 | – | – | |
| PANTHER | 856 | 1004 | 149 | 4.70E-268 | – | |
| PANTHER | 856 | 1004 | 149 | 4.70E-268 | – | |
| MobiDBLite | 1010 | 1077 | 68 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Cellular component | DNA polymerase III complex | The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork. |
Expression pattern of Lj4g3v0037530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0037530.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.