Domain Predictions — View

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cd01466

Source: CDD

Description

vWA_C3HC4_type

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 12

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0266539.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi\|357443207\|ref\|XP_003591881.1\|	Domains G3DSA:3.40.50.410 IPR002035 IPR032838 PF00092 PF14624 PS50234 PTHR10579 PTHR10579:SF61 SM00327 SSF53300 cd01466 mobidb-lite	12
Lj0g3v0288799.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi\|357443207\|ref\|XP_003591881.1\|	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 NON_CYTOPLASMIC_DOMAIN PF00092 PF13639 PF14624 PS50089 PS50234 PTHR10579 PTHR10579:SF61 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SM00327 SSF53300 SSF57850 SignalP-noTM_EUK cd00162 cd01466 mobidb-lite	27
Lj1g3v4047310.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi\|357472157\|ref\|XP_003606363.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF61 SM00184 SM00327 SSF53300 SSF57850 cd00162 cd01466 mobidb-lite	20
Lj3g3v3131850.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi\|357466819\|ref\|XP_003603694.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 TRANSMEMBRANE cd00162 cd01466 mobidb-lite	21
Lj3g3v3131860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi\|357466819\|ref\|XP_003603694.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd00162 cd01466 mobidb-lite	18
Lj5g3v1811590.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi\|357443207\|ref\|XP_003591881.1\|	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR002035 IPR013083 IPR018957 IPR032838 PF00092 PF00097 PF14624 PS50234 PTHR10579 PTHR10579:SF61 SM00327 SSF53300 SSF57850 cd00162 cd01466 mobidb-lite	19
LotjaGi1g1v0414100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger ring-type protein; TAIR: AT5G49665.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7J445\|G7J445_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0414100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	19
LotjaGi1g1v0414100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger ring-type protein; TAIR: AT5G49665.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7J445\|G7J445_MEDTR Zinc finger (C3HC4-type RING finger) family protein; Found in the gene: LotjaGi1g1v0414100	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR036465 PF13519 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF55 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	19
LotjaGi3g1v0165000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A0B2PPB7\|A0A0B2PPB7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0165000	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	21
LotjaGi3g1v0165000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A0B2PPB7\|A0A0B2PPB7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0165000	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 PF00092 PF14624 PF17123 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SM00184 SM00327 SSF53300 SSF57850 cd01466 cd16448 mobidb-lite	21
LotjaGi5g1v0273400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|G7I519\|G7I519_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi5g1v0273400	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR001841 IPR002035 IPR013083 IPR032838 IPR036465 NON_CYTOPLASMIC_DOMAIN PF00092 PF13639 PF14624 PS50089 PS50234 PTHR10579 PTHR10579:SF111 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SM00327 SSF53300 SSF57850 SignalP-noTM cd01466 cd16448 mobidb-lite	28
LotjaGi5g1v0273400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|Q55874\|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr\|A0A072VZM6\|A0A072VZM6_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi5g1v0273400	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.410 IPR002035 IPR013083 IPR018957 IPR032838 IPR036465 PF00092 PF00097 PF14624 PS50234 PTHR10579 PTHR10579:SF111 SM00327 SSF53300 SSF57850 cd01466 mobidb-lite	19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	8.33