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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0165000 |
| Transcript ID | LotjaGi3g1v0165000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q55874|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr|A0A0B2PPB7|A0A0B2PPB7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0165000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22459088..22463865) extracted from Lotus japonicus Gifu genome v1.2.
CAACAAACTCTTCTGCCTCTACCTCTCACCAATCCTCACCTTTATTTCTCTCTTCCCATTCTTCTCATTTCATTTCTCTG TCACCGCCTCTGTTTCTTCACCTTCCTCTGTTTCAATCATTCAATGCTCAAACACATTATTAGAATGTATATTTTCTTCA ACCATTCTCTCTGAATTTCCCACCTCTGTTGCTGTAGCCATTGCTTCAGGAGAATCCATCTGGTAGAGAAAAAATGGAAA GTAAATGGAGGATCAACATCACCATGGTTCATTCCTCATCCGCTGCCATTGCATATTCTGACTCTGTTTCAGCCACCACC TCTGCTTCTGTGGCCATTGTTTGAGGATCTGAGATAGAATCCATTTTTGGGAAGAAAAAATGGAAAGTAGGTGGAGAAAA CTGTGGATCAACATGTGTGTTCATGTTCCTAAGACAGTGAATCATTCTTCATCCTCCAACGGCTCCGCCACCTCGTTTTC TGGTCATGTTTTGACTTCCGGCGATGGTTCCGGTTACCGGGCAACAACTCCGACATCCTCTTCCTCGTCCTCGTCCTCTG GTCTCCGCCTCTCCAAATCTAAATCCTCCAAGGTTTGCATATTCACAATTAAATTGGCATTTTTTTTCTTCATTATTGAA TTACCATAGTAAATTCTTATTGTAGAATTTTACTGCCTTGGTTGTGTTTTGTTAATTGTATTTTTTTTTTCTATCTTATA TTTTTTGTATATTGATTCTAATGGGGTAGTTCGATCTTTAAGAGACGCATTTTTGGGTAGACAATTGAACTTTACCTGCC CTGATCGAATATGATTGTCTCGATAGAGAATAGGTTAAACCAAAAATGTGTATTTTATTGGTAGAATGAATTTTTAAAAT ACTACTTGATATGGGGATTAGATCTAAATTAACTGATATCATGTGCATTTGTTTTGTAATTTATACCTTTGAAAGGAACA AGATGACAATTTAGTGGAATTGTGACGTTTTGGACTATTGTGGAAAGTGGGGGTGGTGTCACTTTCTTCTCCATTGTTGT GTGTAGTGCCATTTTTTAAGGACCTATGGATTGGCTTACAAGCCTTATGGGAAAGAAGGGTTGCATTGCATTTATTTGAG GGAGGCCTTTCTCCTACTTTGTACAATTTCTTGCTAATTTCTATGTGCTAACCCCACAAAGAGTCAAACATCCCTTAATA GTTGATTGTGAAACCCAGCTGTAAACAAACAAAAAGTTGGGATTTGACAGGATAAGAGGCATTCCAACAAAAGAAATCCT AGTCCTAGAGAGGCATGAATGAGGGTGTGTTTGTTTTTTCTACATTGAAATGTTGTGAATTTTAATGCATATTCAACTAA CGAAATACACTTGTTGGATTGAGCGAATGTGTTTTTGGATTATCCCAACACATCACAAATCTAAAAGGCATTGGATCATT TTTGTTTCTTCCTCTTTTGATAGTAATTTTATCTGATTATTTAGTAATTAGTTAATATCTCTAAAGGTTTCAACTTTCAA TGTTAGATTTGTGGTTTACCTTTACTTTTCTGTGATTGTTAATTTGACCACCTAACGTTGACGTTTCTTTTTTTTTTTAA AAGAAAAAAACTTTATAAGCTGTAGATTCTCCTGACCTGAGCATCCTAGACTTTTTGGTAATTAGGCATCAAAATAGTAC TAATAAAATGGTGTCTGGGATAAAGATGAGTAGCAATCTGTTTCCACTTTTTATGCACTGTGCTTTGTGGTGGACCTGCA TCGAGACAGAAGTGGGTTAGTGTTAGACAGAATAATAATAGTGACTTCTGCAAATTTTGCATTTATCAATGAATACTACA CACTGGATTGTGAAAACAGTTTTGTGGGCAACACAAAATGAAAATTATTTAATGAAAAACAGTAATATTTTTAAGAATAC TTATATTTGCTTGATTTTCTTGGCCCCCTCTTACTTGTTTTTTGAAAGCTTGACCATTCAAGAAATCAACCTTTTAGATT GGATCCATGTCCCTAAACATGTCATCTGTGGCATCTTTTTCCAATTCCATTTCTGATTTTTTGTATGATTAGTAATCATT ATAATTAAGATCCTCTTGTCCGTAAAAAAGACAACTATAAAGCTCCCGCTATGCTGGAGATCTAGGGAGGGGTCAAATTC ACTTTATGGATCTAATGTAGATAGTCTTACCTAGCATTTTTTACAAAAAACTGATTCCACGGCTTGAATCTCTGGTTGAC TGATTGCAAATCACATGGCAACAACCTTACTGATGCGTCGAGACTCGAGACTTGAAAGAAAAATGCTAAATGATAGCATT ACACTTGTAGCTTTTCTAAATAAAAAAGAGTATTGCTTTACATCAGTTATTTATTTACTCTATTGTCCTTCTCAACTATG ATTGGTTATTAAGCATTTGAATTAATTTGGTACAAAATTTAACAAATAGAATTGTTGTCTAAAACCTGAAGATTCAGTAT CTACTTTCCTTCTCAAACCTAGTGGCCTAGATGATATCAACATGGCCGGTTTAATTAAGCAAGTATCAAATAAGGGTTAG AGTTTCACATTCCTCAAAAGTGTTTTAGATGACCTTAACATGTTCCTTTTTCCCCATCCTTCCATGTGAAGGTAAGAAGT CTGTAGAGTTTTGTTTGGTATTTTGTATATCAACTATCCTGATTCTGAATGCCAATATTAGCATTTGGGGCTTCTTTTCT CATATTTTTTGTTTCACCTTCTCAGCAGGGAACATGTGCAATATGCTTGAATTCATTGAAAGCAGGAAAAGGGCATGCCA TTTTTACTGCAGAATGTTCTCACTCTTTCCATTTCCATTGCATCACATCTAATGTAAAACATGGGCATCAGGTGTGTCCT GTATGTAGAGCAAACTGGAAAGAGGTTCCTTTTCCACGCCCGGCTTCTAATGTCCCACAAAAAGTTGGTGCAGGTCGGAT CAATGCATCACTTGACAATTTTTCGGAACCAGCTATCTTTGATGATGATGATGAGGTTTTGGACCAACAACCTTCAATTG CTCACAACATGAATGAGGTTGATTGCAATATAATTAACTCAATGGAGATCAAAACTTACCCTGAAGTTTCAGCTATTTCA AAGTCAGCCTCTTATGATAACTTTGCGGTGTTAGTTCATCTCAAAGCTCCTTCTCATTCCCAAAAACAACTAAATAATGG CAGGAACAATACCGAATCTTCAGAGCCAGTTCATAAGTCACGTGCTCCAATTGACCTCGTGACAGTTCTTGACGTAAGTG GGAGCATGGCAGGTACAAAGATTGCATTACTAAAACGAGCTATGGGATTTGTCATACAGAATCTAAGTTCATCAGACCGG CTTTCTGTTGTTGCCTTTTCCTCCACAGCCCGCCGCATCTTCCCTCTACGGCAGATGACTGAGACCGGACGGCAGCAGGC CTTACAAGCAGTTAATTCATTGGATCCAGATAGTGGAACAAATATTGCTGAAGGTTTGAAGAAAGGGGTTAAGGTGTTTG CTGAACGCAAGTGGAAGAATCCAGTGGGGAGTATCATGTTGCTATCTGATGGGCAGGATACATACACATTCAGCAGGCCC CGTGTTGAAGCTGATTACCGGTCTCTTGTGCCAAGCTCCATTCATCGTAGTAATTGTGAGGGTATGCATATACCAGTTCA TGCTTTTGGATTTGGTGCTGACCATGATGCTACTGCAATGCATTCAATCTCTGAGATTACTGGGGGCACGTTCTCTTTTA TTGAAACTGAGGATATGATTCAGGATGCATTTGCACAGTGTCTTGGGGGACTTATGAGCGTGGTAGTTCAGGAATTACAG ATAGAAGTTCGGTGTTTTAACCCTTGTCTACAACTTAGTTCAGTGAAAGCAGGTAGTTACCAAACTAGATTGATTAACAA TGCAAGAATGGCATGTATTAAGGTAGGAGACTTGTATGCTGAAGAAGAAAGAGACTTTTTCATAACAATGAATGTTCCTG CTGATGATTCTAGTGATGAGATGTCATTGTTGATTGTTAGAGGCTTGTACAGAGACCCTACCACAAAGGAAATGGTGGGT TTGGATGTAACTAGTGAAGTGAAAATTCAGAGACCTGATATAGCTAGAGGAGTAGCTGTCTCCATAGAAGTAGACAAGCA GCGAAATAGGAATTTAGCAACGGAGGCAATGACTGAAGCTAGAGTTAAAGCTGAGCGCGGCGACTTTGTTGCTGCAGTTT CTACCTTGGAGAGTTGTCAAAGGGCACTGTCTGAAACTGTTTCGGCCCGAGCTGGTGATAGCTTATGTGTTTCTTTGTCT GCTGAACTGAAGGAGATGCAAGAGAGGATGGAAAACCGGCGAATTTATGAACAGTCTGGAAGAGCTTATCTTCTATCAGG AATTAGCTCTCATTCATCTCAAAGAGCAACTACACGAGGTGATTCCACAGACACCACCAGATCATACCAAACCGCTTCCC AGGTAGACATGATTACCCGTTCCCAAACCATGCTTATGAGGACCACACAACCTGGAAATAGCCTCCCTCCTTCTAAATCC TTCAATGACCGGCTGGGAAGAAAGAAATAATCATGAAACTGTGTTTAGAAAATTATTTACGTTTTATTTTAGGCAGTTAA AGTTACTAATTATGCCATTGTAAAACTATGCATTGATTAGATGAAGGATGAAGAACAAATTTGATATTAAGACATCATTA TTAGAGATAATGCATTTTTTCCAGTTCAATGGTCTATCTTTGGGAGAAAGAAGGTATA
CDS sequence (LotjaGi3g1v0165000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGTAGGTGGAGAAAACTGTGGATCAACATGTGTGTTCATGTTCCTAAGACAGTGAATCATTCTTCATCCTCCAA CGGCTCCGCCACCTCGTTTTCTGGTCATGTTTTGACTTCCGGCGATGGTTCCGGTTACCGGGCAACAACTCCGACATCCT CTTCCTCGTCCTCGTCCTCTGGTCTCCGCCTCTCCAAATCTAAATCCTCCAAGGGAACATGTGCAATATGCTTGAATTCA TTGAAAGCAGGAAAAGGGCATGCCATTTTTACTGCAGAATGTTCTCACTCTTTCCATTTCCATTGCATCACATCTAATGT AAAACATGGGCATCAGGTGTGTCCTGTATGTAGAGCAAACTGGAAAGAGGTTCCTTTTCCACGCCCGGCTTCTAATGTCC CACAAAAAGTTGGTGCAGGTCGGATCAATGCATCACTTGACAATTTTTCGGAACCAGCTATCTTTGATGATGATGATGAG GTTTTGGACCAACAACCTTCAATTGCTCACAACATGAATGAGGTTGATTGCAATATAATTAACTCAATGGAGATCAAAAC TTACCCTGAAGTTTCAGCTATTTCAAAGTCAGCCTCTTATGATAACTTTGCGGTGTTAGTTCATCTCAAAGCTCCTTCTC ATTCCCAAAAACAACTAAATAATGGCAGGAACAATACCGAATCTTCAGAGCCAGTTCATAAGTCACGTGCTCCAATTGAC CTCGTGACAGTTCTTGACGTAAGTGGGAGCATGGCAGGTACAAAGATTGCATTACTAAAACGAGCTATGGGATTTGTCAT ACAGAATCTAAGTTCATCAGACCGGCTTTCTGTTGTTGCCTTTTCCTCCACAGCCCGCCGCATCTTCCCTCTACGGCAGA TGACTGAGACCGGACGGCAGCAGGCCTTACAAGCAGTTAATTCATTGGATCCAGATAGTGGAACAAATATTGCTGAAGGT TTGAAGAAAGGGGTTAAGGTGTTTGCTGAACGCAAGTGGAAGAATCCAGTGGGGAGTATCATGTTGCTATCTGATGGGCA GGATACATACACATTCAGCAGGCCCCGTGTTGAAGCTGATTACCGGTCTCTTGTGCCAAGCTCCATTCATCGTAGTAATT GTGAGGGTATGCATATACCAGTTCATGCTTTTGGATTTGGTGCTGACCATGATGCTACTGCAATGCATTCAATCTCTGAG ATTACTGGGGGCACGTTCTCTTTTATTGAAACTGAGGATATGATTCAGGATGCATTTGCACAGTGTCTTGGGGGACTTAT GAGCGTGGTAGTTCAGGAATTACAGATAGAAGTTCGGTGTTTTAACCCTTGTCTACAACTTAGTTCAGTGAAAGCAGGTA GTTACCAAACTAGATTGATTAACAATGCAAGAATGGCATGTATTAAGGTAGGAGACTTGTATGCTGAAGAAGAAAGAGAC TTTTTCATAACAATGAATGTTCCTGCTGATGATTCTAGTGATGAGATGTCATTGTTGATTGTTAGAGGCTTGTACAGAGA CCCTACCACAAAGGAAATGGTGGGTTTGGATGTAACTAGTGAAGTGAAAATTCAGAGACCTGATATAGCTAGAGGAGTAG CTGTCTCCATAGAAGTAGACAAGCAGCGAAATAGGAATTTAGCAACGGAGGCAATGACTGAAGCTAGAGTTAAAGCTGAG CGCGGCGACTTTGTTGCTGCAGTTTCTACCTTGGAGAGTTGTCAAAGGGCACTGTCTGAAACTGTTTCGGCCCGAGCTGG TGATAGCTTATGTGTTTCTTTGTCTGCTGAACTGAAGGAGATGCAAGAGAGGATGGAAAACCGGCGAATTTATGAACAGT CTGGAAGAGCTTATCTTCTATCAGGAATTAGCTCTCATTCATCTCAAAGAGCAACTACACGAGGTGATTCCACAGACACC ACCAGATCATACCAAACCGCTTCCCAGGTAGACATGATTACCCGTTCCCAAACCATGCTTATGAGGACCACACAACCTGG AAATAGCCTCCCTCCTTCTAAATCCTTCAATGACCGGCTGGGAAGAAAGAAATAA
Protein sequence (LotjaGi3g1v0165000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESRWRKLWINMCVHVPKTVNHSSSSNGSATSFSGHVLTSGDGSGYRATTPTSSSSSSSSGLRLSKSKSSKGTCAICLNS LKAGKGHAIFTAECSHSFHFHCITSNVKHGHQVCPVCRANWKEVPFPRPASNVPQKVGAGRINASLDNFSEPAIFDDDDE VLDQQPSIAHNMNEVDCNIINSMEIKTYPEVSAISKSASYDNFAVLVHLKAPSHSQKQLNNGRNNTESSEPVHKSRAPID LVTVLDVSGSMAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSLDPDSGTNIAEG LKKGVKVFAERKWKNPVGSIMLLSDGQDTYTFSRPRVEADYRSLVPSSIHRSNCEGMHIPVHAFGFGADHDATAMHSISE ITGGTFSFIETEDMIQDAFAQCLGGLMSVVVQELQIEVRCFNPCLQLSSVKAGSYQTRLINNARMACIKVGDLYAEEERD FFITMNVPADDSSDEMSLLIVRGLYRDPTTKEMVGLDVTSEVKIQRPDIARGVAVSIEVDKQRNRNLATEAMTEARVKAE RGDFVAAVSTLESCQRALSETVSARAGDSLCVSLSAELKEMQERMENRRIYEQSGRAYLLSGISSHSSQRATTRGDSTDT TRSYQTASQVDMITRSQTMLMRTTQPGNSLPPSKSFNDRLGRKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 134 | 110 | 0.0 | – | |
| PANTHER | 25 | 134 | 110 | 0.0 | – | |
| MobiDBLite | 44 | 67 | 24 | - | – | |
| Gene3D | 58 | 126 | 69 | 4.1E-13 | ||
| SUPERFAMILY | 71 | 129 | 59 | 5.71E-15 | – | |
| Pfam | 74 | 103 | 30 | 5.8E-9 | ||
| CDD | 74 | 118 | 45 | 3.16199E-12 | – | |
| SMART | 74 | 117 | 44 | 2.2E-6 | ||
| ProSiteProfiles | 74 | 118 | 45 | 11.943 | ||
| PANTHER | 147 | 666 | 520 | 0.0 | – | |
| PANTHER | 147 | 666 | 520 | 0.0 | – | |
| MobiDBLite | 214 | 228 | 15 | - | – | |
| MobiDBLite | 214 | 234 | 21 | - | – | |
| SUPERFAMILY | 236 | 423 | 188 | 9.88E-33 | ||
| SMART | 238 | 419 | 182 | 4.0E-27 | ||
| CDD | 239 | 410 | 172 | 1.2564E-57 | – | |
| Pfam | 240 | 420 | 181 | 1.8E-25 | ||
| Gene3D | 240 | 424 | 185 | 8.9E-45 | ||
| ProSiteProfiles | 240 | 434 | 195 | 16.452 | ||
| Pfam | 588 | 657 | 70 | 1.9E-19 | ||
| MobiDBLite | 621 | 648 | 28 | - | – | |
| MobiDBLite | 662 | 684 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0165000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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