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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0489100 |
| Transcript ID | LotjaGi3g1v0489100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT5G60710.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q55874|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr|A0A0S3SCP0|A0A0S3SCP0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0489100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90701222..90707799) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAATATAATTTCCATATCAGCAAAGAAAGCTGCACCTACTTTGCCTCTACCCTATGATCACTGACCACTCATCATCT CTCTCTCTCATCTAAACCTTCCTTCCTTCATTCATCCATTGAAAAACCAAAACCAAAACCTCCTTCTCTTTTCCTCTCCT CTCCCTCACATTCATTACACCTACCCTTTTGCCTCCCCCTTCTGAAAATTTATTTCATTCCTCTCCTCCACTTCCCCTTA TCTCCATTTTTCATACCATAGTTCCATTTTTCAACAAAGTTCAAATCTTTCACCCACTCACACATTCCTACTTGAAGATC TAACCATAAACCCTTTTGGGGTGAACAAAGAAGAAGAAGAAGCAAAAGCCATGTCAAGCAAATGGAGAAAAGTGAAGCTT GCTCTTGGCTTCAATTCATGTGCTCACATTCCTAGCCCTTTAGATGATTCCTCCTCACCTCTCAACTCCACCGCCGCTAG ATTTTCCGGCGCTGCACTGCCGTCTGTTGTTTTTCCGGCCAGTGACACCTCCAGTTACCGCCCTAGCACCCCTACACCAT CATCCTCTGGTCTCCGACTTCCCAAATCAGGATCCAAATCACCAAAGGTTAGACCTTATCTGAAATACCCTTTAAGCTTT TTTACATGTTGAACAAATAAAGTTTCAATTTTTATCATGTTTTTTTGTTTTCTAAAGTTACCCTTTTGCTTCATCTTCAC CATTGATTCATTGAATGAATCTCCATGGTAGATTCTGGTGAAAAAGGTTTTTCACTATTTGGGTTTAGGCAAATTCATTG CATTTTTTTTTTGTTTATCTTAATCTTTTTTCTCATTCAACTCTTGGTTGTGTTGTCCCCGAATGATAGCTATGTGACAT ATGAGTTGGGGTGGGGTCGATCCCCAAACGGTGCAATTTATCTTTCCGATGTAAAAAAAATTATTGATTGTGTTAGAAAA AAATAATTACCATTACATTAATCTTAATTCTTAGTTAGAATTCTTAAAATGAATGAACATGATTAGATGGATGTCAATTT CAGCTTGCTTTTGTTTTTGTCTCTCAATGAATTGTGGCATGGTGGATTGTGACGCATTCTGACTATTGTTGCTGAAACGT TTTATTCTCCCTTGTGTTGTTTTCAACTCTATTATGGGTGGGGAATGGTATAAAGTGGGGGGTACTATTACTATGCCTAC CCTATAAGGACAAGTTGCTTGGCTCATTACAAATTATTTGCATTGAAAGCCACTCTTCTTGTTTCTCTTCTTCCATTACT GTTTTACTGCTGCCACTGTTCAATCCACTGGAGTTACTACTCTTTCTCTCTCTCTCTCTCTCTCTATCTTCTTTACACTC CATGTTATCCCCACAAAAGGCCCCTCAACCGTTGATTGTGAAATTCCCATATGCAAACAAGGAAAAAGTTGAAAATTTGC AGGATGATCAATATAATAAAGCAAATTGAAAAAGTAAAATAAAATCCTAGAGCAATGAACAAATCATCTTTGAATTCTTC TTCTTTCGATGTCATTTATATTTTAATATTGGTTAATGTCTCGAAAGGTTCAATGTTAGAGTTGAGAATTTGTCTTGGTT ACCTTTTTTAAAGTTGGTTGATGGTTGTTTTAAGTTATTTTTTCCCCTTGGTATCATCAAAGTCTTTGACCACCAAACGT TGACCTTAGTTTTGTCTTTGTACTTAGCAGTGGATTTGCTTGAGAAACTAGGTGTCTTTAGTAGGAATCTGTGGTAAAGA TGGGTTGCATTCCATTTCATCTTTTTATGCAATGGTCTTATTAGTGGACCTGCATTGGGGCAGGAGGGCAGTGTTAGACA CTACTCCCTCCGGTCCTATTTATAAGCAACAAAAAAAAATTTCACATAGTTTAAGAAATGTAGTTAAACTAGATAAAATG CATTAAATTTGTCTTAAATCAAAATAAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGGGAAAGAGAGAGAA TAATTAATGAGACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAGCTCAAACTTTC ATTTGGTTCTTATAAAAAGGACCAAGGTTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTATAATGCAATA GTGACCTTTGCAAATGTTGCATTTTTCAATGACTACTTTATTGAGGCACTGCTCAGATTCACCGATTCAATGAACTTAGT TCCTTTTTCTTTTAATTATTTTATCAACAGAGTAATAATATGTTTGGATCCGTTTCTCTTTTCTAACAGTCAATTCTAGC ACCCAGAAGTTTCTTCCTGGAATTGATTTTGGCTTCATAATCGATTGTAAAAGGATTTCCAAACATGCCATAACAGAGAT ATTAGTATAGATGGTTGGATAATCTGTGGCAATGTTTTCCATTACTGAATTTATTTAATTAAAAACCTTAAGTTCATCAA TACACATTGTTGCTGACAGTGGGATTTGAACTTAGGACCAGTTATGGCTAACCACAGTCTAATTTTATTTGAAACTTGAA AATTAGTTTAAAACCACAGATACATTATTGAATTGTCGTGGGGAGGTTGCAGATTCTTTTCATACCTGACAAAGATTAAT TTGGATACTGGGTAAAGCTTGTGGATATTGACATCCTAGAGTTCTTCATAAGCTGAAAGATTCAGAATTGTAAAGTTTTA AAGCTGATGGAGGATCTTAATGCTTTGATATACATTTTATTAGTGTTGACTTCAGATCTAATGCTCTCTTAGCAGCTTTG TAAACATGTTTCCGGTTGGTGCATTCAATTTTATCATTGGTTAAAAATCTGATTTCATCATAGTTGTTGCTTTAAACTTG GATGGTTATGGATGTAATAGCCAAACCCATAATTTCCTCAATATAATCATTGGGCATTCTAGACTCATAAGTTAACAACA CTTGGAAACATTTTTTTAGTGGGAGCAGTATTTATTATTTAAATGTTTTATGCTATAGTGGTGATAGGTAATTGTGACTA GCAGCTTATGCTGTCTAGTCTTTCTTACAAATTTGAACTTAATGTTTTGAAAGTTCTCTATGATAGAAAACATCGTCTGA GATTTCATTTCATTATCATTATGCCATAAACGTAGTTTAGTTCTTGGTAATCTGTTGGTGCTTATTTGACAATCAAGTCT TGTCAAATGAAGGTAAGTGTTACACTATTCTACATTCCCAAGTTGTTTTCTAGATGTCATTAATATGTCTCTTTTTCCCT TTCTTCCTCTTTGGTTGAGGGTATGAGTTTTCTTGAGTCATTTTGTGATATCTACAAGGAACTTTATGGTACAAAAGTCT CACCATTGTGTCCACTTTCTTGTATACTTCCAGTTCTGCATCTAAATCTTGTTGTTACTTCAGTAGTATTAGCACCTTCT TTTGCTGACATATATATCTACTATAATCACAGGGAACTTGTGCAATATGCCTGAACTCAATGAAACCAGGGCAGGGCCAT GCCATTTTCACTGCAGAATGTTCTCACTCTTTTCATTTTAAGTGTATCACTTCTAATGTGAATCATGGGAATCGGATTTG CCCTGTTTGCAGAGCAAACTGGAAAGAAGTTCCTTTTCAAAGTCCTGCTTTTAATATGTGCCATGGCATGCCTCAAAACA ATGCAGTAATTCCACAAGATGATGACTTGACAGGTATCATCAGGAGACTTCCTTCTCCTCAAGTGGATGCAAGTCGGCAG GTTTCATCGCTTTATCATGTTTCTGAACCAGCTATTTTTGATGATGATGAATCCTTGGACCAACAAGCTTCAGTTACCCA CAGTAAGAATGAGCCTGATCATCATATCATAAATACAATGGAGATAAGAACATATCCTGAGGTTTCAGCTGTTCCAAAGT CAGCATCTCATGATGCCTTTGCTGTACTAATTCATCTCAAAGCTCCGCACTCAGAGAGAAAACATGATATTTGTGGAAAC AATACTGACTCACCCTCACCACCACCTTTAGTTGAAAATTCTCGTGCTTCGGTTGACCTTGTTACAGTTCTTGATGTAAG TGGTAGCATGGGAGGTACTAAGCTTGCATTGCTAAAACGAGCTATGGGTTTTGTCATTCAAAATCTGGGTCCATCGGATC GGTTGTCTGTCATTGCCTTCTCTTCCACAGCGCGCCGTATCTTTCCTCTTCGGCTGATGACTGACATTGGAAGGCAGCAG GCATTACAGGCTGTCAATTCTTTGACTTCAAATGGCGGGACAAACATCGCTGAAGGCTTGAGGAAAGGTGCCAAGGTGTT TGCTGAACGCCGGTGGAAGAACCCAGTTAGCAGCATCATATTGCTATCTGATGGGCAGGATACGTACACAATTAGTAGCA GACCGAATGTTGGAACAGATTACCAGTCACTTGTCCCAAACTCCATTCATCACAATAATGGTACAGGGTTGCATATACCG GTGCATGCTTTTGGCTTTGGCACTGATCATGATGCTACTTCAATGCATTCTATCTCTGAGATATCCGGGGGTACATTTTC TTTTATTGAAGCTGAGGATGTGATTCAGGATGCATTTGCACAGTGTATTGGGGGGCTCTTGAGTGTGGTTATGCAAGAAT TACAAATTGAAGTTGTGTGTGTTCATCCTCATTTGCAACTTAGTTCAGTGAAAGCAGGAAACTACCGAACAAGCTTGACG ACCAATTCAAGAATGGGTTCTATAAATATTGGGGATCTGTATGCTGATGAAGAAAGAGACTTTTTGGTGACAATCAATGT TCCAGTTGATAGCTCAAGTGATGAGATGTCATTGTTGACGGTCAGAGGTCTCTATAGAGACCCCATGACAAAAGAAATGG TGGCTCTGGAAGAAACTAGTGAAGTAAAAATTCAGAGACCTGACGTCGGTAGTGAGTTAGTTGGGTCGATAGAAGTTGAC AGACAGCGAAACCGGCTTCAAGCAGCTGAGGCAATGGCAGAGGCTAGAGTTGCGGCCGAACGCGGGGATTTGTCCACTGC AGTTTCTATCCTAGATCGCTGCCAAAAGGCGTTGTCTGAAACTGTTTCTGCCCAAGCCGGGGATCGGTTATGTGTTGCGC TTTCGGCTGAATTAAAGGAGATGCAAGAGAGGATGGCGACCCAACAAGTCTATGAGCAGTCTGGAAGGGCTTATGTTTTG TCAGGAATGAGTTCACATGCATGGCAAAGGGCAACAGCGAGGGGTGATTCTACCGACAGCACCAGCGTTATGCAATCATA CCAAACCCCTTCTATGGTTGATATGGTTATGCGATCTCAAACCATGGTTTTCGGAGCTCCTCAAGGTAGACGCGTTCTCC AGCCTACTAAATCATTTCCTGAGAGGCAGAGAAGATAATAATAATGCAAACTGGAAAAATCATTCTTATCCTATACATAC AATTGTGGGGGAAGAGAGACTTTTGAGTTTCTTCTAGCATGTTTAATTCCACGGTAAAGTGCTCTAGAATCCATTCTGGT TAGAAGCTACAAGTCTTAGCTTCTGAGTACTTTGAATTCTGTGCAAGTCATGAAACCAAACATGCACTCTTATCTTTTTT TGCCATTTTATTTTTTGGTTTTTGTCAAGGTGGGGTATAATGGAAGGAGTTTTGGGTGGATAAAATTCCTGATTTTGCCA AATTAAACTGTAAATGCATAAGCTGGATAATGGGGCTCTGCGGAGAATGGTGAAAAGGGACAGGTGGATATGTCAAGTGT GATTCTGAGTGATGTACATAACTTACTGCTTTCAGTTGAGTTGTGTGGGTGAATTTTTTTTCACTTTGATTCTATATTCT ATATACATATGATATATACTATTATGCTTCTGATTCTTTTCATAAGTGGATATTCTGATATATGTTTTAAGTTGAATTGT GCAGGTGAATTCTTCACTTGCTTGTTGCTTTTGCCTTTTAATTTTATATATTACTTTAGTTTGTCACATTCAGCCATTCC CCATTGGCTATGACAAAATTTCCATGGCTATTTATTCCCCTCCACTTTCTATTCCTCCTTTTTTTCATCATTTGCATCAG ACTAGTTGACCATTGGATTCGCACTAATTTTCTATAATTCAAAATCTGCTATTATGAATGGTGCCCGTATTTAGAATCTG ATTCAAATCTTTCAAAGTTGCATCATATCTTTTACAAGCATATAATAATGTACTTTAAAAAAGCAAATGTCAAATTTTCA TAAAATATAACTACTTAACACCCACCATACACAAATGTTGTCTGTCATAAAATTCAATTCCAATTATAGTAACCCACTCC TGCCTTCAAAAAAAAAAAAACCAGTCTTGTGCAAGCTTGACAAGGTTTTGATCCCTTCTTTTATGGCCTGTAAAAAAGTA ATAACAATCCCAATCTTGAGATGTTTCATTACAAACCTTGGCCTCAAGAACTCTCTTGGACTATCTTCAGATACTACGTC AGTACTCATTTTGTGATAAAATTGAATTAACATTTTTTAAGTTGAGATGAAACTCTCTTTAAAGAAAGAAAGTCTGTTTA TTCCACTCATGTACAAAC
CDS sequence (LotjaGi3g1v0489100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGCAAATGGAGAAAAGTGAAGCTTGCTCTTGGCTTCAATTCATGTGCTCACATTCCTAGCCCTTTAGATGATTC CTCCTCACCTCTCAACTCCACCGCCGCTAGATTTTCCGGCGCTGCACTGCCGTCTGTTGTTTTTCCGGCCAGTGACACCT CCAGTTACCGCCCTAGCACCCCTACACCATCATCCTCTGGTCTCCGACTTCCCAAATCAGGATCCAAATCACCAAAGGGA ACTTGTGCAATATGCCTGAACTCAATGAAACCAGGGCAGGGCCATGCCATTTTCACTGCAGAATGTTCTCACTCTTTTCA TTTTAAGTGTATCACTTCTAATGTGAATCATGGGAATCGGATTTGCCCTGTTTGCAGAGCAAACTGGAAAGAAGTTCCTT TTCAAAGTCCTGCTTTTAATATGTGCCATGGCATGCCTCAAAACAATGCAGTAATTCCACAAGATGATGACTTGACAGGT ATCATCAGGAGACTTCCTTCTCCTCAAGTGGATGCAAGTCGGCAGGTTTCATCGCTTTATCATGTTTCTGAACCAGCTAT TTTTGATGATGATGAATCCTTGGACCAACAAGCTTCAGTTACCCACAGTAAGAATGAGCCTGATCATCATATCATAAATA CAATGGAGATAAGAACATATCCTGAGGTTTCAGCTGTTCCAAAGTCAGCATCTCATGATGCCTTTGCTGTACTAATTCAT CTCAAAGCTCCGCACTCAGAGAGAAAACATGATATTTGTGGAAACAATACTGACTCACCCTCACCACCACCTTTAGTTGA AAATTCTCGTGCTTCGGTTGACCTTGTTACAGTTCTTGATGTAAGTGGTAGCATGGGAGGTACTAAGCTTGCATTGCTAA AACGAGCTATGGGTTTTGTCATTCAAAATCTGGGTCCATCGGATCGGTTGTCTGTCATTGCCTTCTCTTCCACAGCGCGC CGTATCTTTCCTCTTCGGCTGATGACTGACATTGGAAGGCAGCAGGCATTACAGGCTGTCAATTCTTTGACTTCAAATGG CGGGACAAACATCGCTGAAGGCTTGAGGAAAGGTGCCAAGGTGTTTGCTGAACGCCGGTGGAAGAACCCAGTTAGCAGCA TCATATTGCTATCTGATGGGCAGGATACGTACACAATTAGTAGCAGACCGAATGTTGGAACAGATTACCAGTCACTTGTC CCAAACTCCATTCATCACAATAATGGTACAGGGTTGCATATACCGGTGCATGCTTTTGGCTTTGGCACTGATCATGATGC TACTTCAATGCATTCTATCTCTGAGATATCCGGGGGTACATTTTCTTTTATTGAAGCTGAGGATGTGATTCAGGATGCAT TTGCACAGTGTATTGGGGGGCTCTTGAGTGTGGTTATGCAAGAATTACAAATTGAAGTTGTGTGTGTTCATCCTCATTTG CAACTTAGTTCAGTGAAAGCAGGAAACTACCGAACAAGCTTGACGACCAATTCAAGAATGGGTTCTATAAATATTGGGGA TCTGTATGCTGATGAAGAAAGAGACTTTTTGGTGACAATCAATGTTCCAGTTGATAGCTCAAGTGATGAGATGTCATTGT TGACGGTCAGAGGTCTCTATAGAGACCCCATGACAAAAGAAATGGTGGCTCTGGAAGAAACTAGTGAAGTAAAAATTCAG AGACCTGACGTCGGTAGTGAGTTAGTTGGGTCGATAGAAGTTGACAGACAGCGAAACCGGCTTCAAGCAGCTGAGGCAAT GGCAGAGGCTAGAGTTGCGGCCGAACGCGGGGATTTGTCCACTGCAGTTTCTATCCTAGATCGCTGCCAAAAGGCGTTGT CTGAAACTGTTTCTGCCCAAGCCGGGGATCGGTTATGTGTTGCGCTTTCGGCTGAATTAAAGGAGATGCAAGAGAGGATG GCGACCCAACAAGTCTATGAGCAGTCTGGAAGGGCTTATGTTTTGTCAGGAATGAGTTCACATGCATGGCAAAGGGCAAC AGCGAGGGGTGATTCTACCGACAGCACCAGCGTTATGCAATCATACCAAACCCCTTCTATGGTTGATATGGTTATGCGAT CTCAAACCATGGTTTTCGGAGCTCCTCAAGGTAGACGCGTTCTCCAGCCTACTAAATCATTTCCTGAGAGGCAGAGAAGA TAA
Protein sequence (LotjaGi3g1v0489100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKWRKVKLALGFNSCAHIPSPLDDSSSPLNSTAARFSGAALPSVVFPASDTSSYRPSTPTPSSSGLRLPKSGSKSPKG TCAICLNSMKPGQGHAIFTAECSHSFHFKCITSNVNHGNRICPVCRANWKEVPFQSPAFNMCHGMPQNNAVIPQDDDLTG IIRRLPSPQVDASRQVSSLYHVSEPAIFDDDESLDQQASVTHSKNEPDHHIINTMEIRTYPEVSAVPKSASHDAFAVLIH LKAPHSERKHDICGNNTDSPSPPPLVENSRASVDLVTVLDVSGSMGGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTAR RIFPLRLMTDIGRQQALQAVNSLTSNGGTNIAEGLRKGAKVFAERRWKNPVSSIILLSDGQDTYTISSRPNVGTDYQSLV PNSIHHNNGTGLHIPVHAFGFGTDHDATSMHSISEISGGTFSFIEAEDVIQDAFAQCIGGLLSVVMQELQIEVVCVHPHL QLSSVKAGNYRTSLTTNSRMGSINIGDLYADEERDFLVTINVPVDSSSDEMSLLTVRGLYRDPMTKEMVALEETSEVKIQ RPDVGSELVGSIEVDRQRNRLQAAEAMAEARVAAERGDLSTAVSILDRCQKALSETVSAQAGDRLCVALSAELKEMQERM ATQQVYEQSGRAYVLSGMSSHAWQRATARGDSTDSTSVMQSYQTPSMVDMVMRSQTMVFGAPQGRRVLQPTKSFPERQRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 707 | 677 | 0.0 | – | |
| PANTHER | 31 | 707 | 677 | 0.0 | – | |
| MobiDBLite | 50 | 76 | 27 | - | – | |
| MobiDBLite | 50 | 72 | 23 | - | – | |
| Gene3D | 64 | 135 | 72 | 1.5E-12 | ||
| SUPERFAMILY | 80 | 134 | 55 | 1.71E-14 | – | |
| Pfam | 82 | 111 | 30 | 4.4E-11 | ||
| SMART | 82 | 125 | 44 | 7.1E-7 | ||
| ProSiteProfiles | 82 | 126 | 45 | 12.12 | ||
| CDD | 82 | 126 | 45 | 2.48226E-12 | – | |
| SUPERFAMILY | 271 | 458 | 188 | 1.67E-32 | ||
| SMART | 272 | 454 | 183 | 2.3E-25 | ||
| Gene3D | 273 | 459 | 187 | 1.8E-43 | ||
| ProSiteProfiles | 274 | 458 | 185 | 16.293 | ||
| Pfam | 274 | 455 | 182 | 3.6E-26 | ||
| Pfam | 623 | 695 | 73 | 2.1E-22 | ||
| MobiDBLite | 701 | 720 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0489100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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