Domain Predictions — View

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PIRSF036947

Source: PIRSF

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0032968 View details of GO:0032968 AmiGO InterPro QuickGO	Biological process	Positive regulation of transcription elongation from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.	Subterm of GO:0032786 GO:0034243 GO:0045944 Positively regulates GO:0006368

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v4081780.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: transcription elongation factor SPT6-like isoform X2 [Cicer arietinum] gi\|502107599\|ref\|XP_004493315.1\|	Domains G3DSA:1.10.150.310 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 IPR000980 IPR003029 IPR006641 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023097 IPR023323 IPR027999 IPR028088 IPR028231 IPR032706 PF14633 PF14635 PF14639 PF14641 PF14878 PIRSF036947 PS50126 PTHR10145 PTHR10145:SF6 SM00316 SM00732 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	37
LotjaGi1g1v0657000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|I1N8M6\|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000	Domains Coil G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR006641 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PIRSF036947 PS50126 PTHR10145 SM00316 SM00732 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	45
LotjaGi1g1v0657000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|I1N8M6\|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR006641 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 NON_CYTOPLASMIC_DOMAIN PF14633 PF14635 PF14639 PF17674 PIRSF036947 PS50126 PTHR10145 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00316 SM00732 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	47

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	33.33