Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

SSF55550

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 20

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0206689.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: transcription elongation factor SPT6-like [Cicer arietinum] gi\|502127604\|ref\|XP_004499769.1\|	Domains G3DSA:1.10.150.310 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 IPR000980 IPR003029 IPR006641 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023097 IPR023323 IPR027999 IPR028083 IPR028088 IPR028231 IPR032706 PF14632 PF14633 PF14635 PF14639 PF14641 PF14878 PS50126 PTHR10145 PTHR10145:SF6 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	37
Lj0g3v0206689.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: transcription elongation factor SPT6-like [Cicer arietinum] gi\|502127604\|ref\|XP_004499769.1\|	Domains G3DSA:1.10.150.310 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 IPR000980 IPR003029 IPR006641 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023097 IPR023323 IPR027999 IPR028083 IPR028088 IPR028231 IPR032706 PF14632 PF14633 PF14635 PF14639 PF14641 PF14878 PS50126 PTHR10145 PTHR10145:SF6 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	37
Lj1g3v4081780.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: transcription elongation factor SPT6-like isoform X2 [Cicer arietinum] gi\|502107599\|ref\|XP_004493315.1\|	Domains G3DSA:1.10.150.310 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 IPR000980 IPR003029 IPR006641 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023097 IPR023323 IPR027999 IPR028088 IPR028231 IPR032706 PF14633 PF14635 PF14639 PF14641 PF14878 PIRSF036947 PS50126 PTHR10145 PTHR10145:SF6 SM00316 SM00732 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	37
Lj4g3v1616870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SH2 domain protein B [Arabidopsis thaliana] gi\|145337714\|ref\|NP_177975.3\|	Domains G3DSA:3.30.505.10 IPR000980 IPR001217 PS50001 PTHR11801 SSF55550 mobidb-lite	7
LotjaGi1g1v0216600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal transducer and activator of transcription A; TAIR: AT1G78540.1 SH2 domain protein B; Swiss-Prot: sp\|Q54BD4\|STATC_DICDI Signal transducer and activator of transcription C; TrEMBL-Plants: tr\|A0A151R0T3\|A0A151R0T3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0216600	Domains IPR000980 IPR001217 IPR013320 IPR036860 PS50001 PTHR11801 PTHR11801:SF43 SSF49899 SSF55550 mobidb-lite	10
LotjaGi1g1v0216600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal transducer and activator of transcription A; TAIR: AT1G78540.1 SH2 domain protein B; Swiss-Prot: sp\|Q54BD4\|STATC_DICDI Signal transducer and activator of transcription C; TrEMBL-Plants: tr\|A0A151R0T3\|A0A151R0T3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0216600	Domains IPR000980 IPR001217 IPR013320 IPR036860 PS50001 PTHR11801 PTHR11801:SF43 SSF49899 SSF55550 mobidb-lite	10
LotjaGi1g1v0657000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|I1N8M6\|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000	Domains Coil G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR006641 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PIRSF036947 PS50126 PTHR10145 SM00316 SM00732 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	45
LotjaGi1g1v0657000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|I1N8M6\|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR006641 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 NON_CYTOPLASMIC_DOMAIN PF14633 PF14635 PF14639 PF17674 PIRSF036947 PS50126 PTHR10145 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00316 SM00732 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	47
LotjaGi3g1v0103300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.10 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.11 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.12 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains Coil G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	42
LotjaGi3g1v0103300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|Q9CAM1\|SPT62_ARATH Transcription elongation factor SPT6-like; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.8 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41
LotjaGi3g1v0103300.9 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp\|A8MS85\|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr\|A0A1J7IEI3\|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300	Domains G3DSA:1.10.10.2740 G3DSA:1.10.10.650 G3DSA:1.10.150.850 G3DSA:1.10.3500.10 G3DSA:2.40.50.140 G3DSA:3.30.420.140 G3DSA:3.30.505.10 IPR003029 IPR010994 IPR012337 IPR012340 IPR017072 IPR022967 IPR023319 IPR023323 IPR028083 IPR028231 IPR032706 IPR035018 IPR035019 IPR035420 IPR036860 IPR037027 IPR041692 IPR042066 PF14632 PF14633 PF14635 PF14639 PF17674 PS50126 PTHR10145 SM00316 SSF158832 SSF47781 SSF50249 SSF53098 SSF55550 cd09918 cd09928 mobidb-lite	41

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	5.00