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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4081780 |
| Transcript ID | Lj1g3v4081780.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transcription elongation factor SPT6-like isoform X2 [Cicer arietinum] gi|502107599|ref|XP_004493315.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 100 | 100 | 0 | ||
| PIRSF | 1 | 1227 | 1227 | 0 | ||
| MobiDBLite | 1 | 32 | 32 | – | – | |
| PANTHER | 1 | 100 | 100 | 0 | – | |
| Pfam | 27 | 155 | 129 | 7.70E-12 | ||
| SUPERFAMILY | 69 | 446 | 378 | 3.92E-51 | – | |
| PANTHER | 120 | 1357 | 1238 | 0 | – | |
| PANTHER | 120 | 1357 | 1238 | 0 | ||
| Gene3D | 221 | 451 | 231 | 8.10E-32 | ||
| Pfam | 465 | 622 | 158 | 1.10E-15 | ||
| SUPERFAMILY | 466 | 622 | 157 | 6.90E-19 | ||
| SMART | 467 | 585 | 119 | 1.00E-18 | ||
| Gene3D | 480 | 611 | 132 | 2.70E-09 | ||
| Gene3D | 612 | 664 | 53 | 8.10E-32 | ||
| Pfam | 626 | 727 | 102 | 7.70E-18 | ||
| SUPERFAMILY | 638 | 728 | 91 | 2.45E-09 | ||
| Gene3D | 676 | 824 | 149 | 5.50E-25 | ||
| Pfam | 741 | 845 | 105 | 5.80E-30 | ||
| SUPERFAMILY | 741 | 825 | 85 | 1.80E-07 | ||
| Gene3D | 842 | 924 | 83 | 1.00E-07 | – | |
| SUPERFAMILY | 845 | 925 | 81 | 9.80E-12 | ||
| SMART | 848 | 921 | 74 | 1.40E-09 | ||
| ProSiteProfiles | 850 | 921 | 72 | 10.189 | ||
| Pfam | 939 | 1156 | 218 | 7.90E-75 | ||
| CDD | 972 | 1060 | 89 | 8.43E-32 | – | |
| SUPERFAMILY | 977 | 1061 | 85 | 8.16E-06 | ||
| CDD | 1071 | 1157 | 87 | 9.94E-32 | – | |
| SUPERFAMILY | 1107 | 1158 | 52 | 9.41E-05 | ||
| MobiDBLite | 1201 | 1363 | 163 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. | ||
| Biological process | Positive regulation of transcription elongation from RNA polymerase II promoter | Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. |
Expression pattern of Lj1g3v4081780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4081780.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.