Domain Predictions — View

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PS50156

Source: ProSiteProfiles

Description

Sterol-sensing domain (SSD) profile.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0126989.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein [Medicago truncatula] gi\|357495641\|ref\|XP_003618109.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 NON_CYTOPLASMIC_DOMAIN PF02460 PS50156 PTHR10796 PTHR10796:SF117 SSF82866 TMhelix TRANSMEMBRANE	12
Lj1g3v2295220.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: niemann-Pick C1 protein-like [Glycine max] gi\|356509590\|ref\|XP_003523530.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR10796 PTHR10796:SF117 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF82866 SignalP-noTM_EUK TIGR00917 TMhelix TRANSMEMBRANE	22
Lj2g3v3373160.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: niemann-Pick C1 protein-like [Glycine max] gi\|356553425\|ref\|XP_003545057.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 NON_CYTOPLASMIC_DOMAIN PF02460 PF12349 PS50156 PTHR10796 PTHR10796:SF117 SSF82866 TMhelix TRANSMEMBRANE	13
LotjaGi1g1v0001400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT4G38350.1 Patched family protein; Swiss-Prot: sp\|O35604\|NPC1_MOUSE Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0R0G729\|A0A0R0G729_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0001400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF82866 SignalP-noTM TIGR00917 TMhelix TRANSMEMBRANE	21
LotjaGi1g1v0001400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT4G38350.1 Patched family protein; Swiss-Prot: sp\|O35604\|NPC1_MOUSE Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0B2RDB9\|A0A0B2RDB9_GLYSO Protein DETOXIFICATION; Found in the gene: LotjaGi1g1v0001400	Domains CYTOPLASMIC_DOMAIN IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	15
LotjaGi1g1v0001400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT4G38350.1 Patched family protein; Swiss-Prot: sp\|O35604\|NPC1_MOUSE Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0B2RDB9\|A0A0B2RDB9_GLYSO Protein DETOXIFICATION; Found in the gene: LotjaGi1g1v0001400	Domains CYTOPLASMIC_DOMAIN IPR000731 IPR003392 IPR004765 NON_CYTOPLASMIC_DOMAIN PF02460 PS50156 PTHR45727 PTHR45727:SF5 SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	13
LotjaGi1g1v0001400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT4G38350.1 Patched family protein; Swiss-Prot: sp\|P56941\|NPC1_PIG Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0R0G729\|A0A0R0G729_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0001400	Domains CYTOPLASMIC_DOMAIN IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	15
LotjaGi1g1v0001400.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT4G38350.1 Patched family protein; Swiss-Prot: sp\|O35604\|NPC1_MOUSE Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0R0G729\|A0A0R0G729_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0001400	Domains CYTOPLASMIC_DOMAIN IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	15
LotjaGi1g1v0001400.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT4G38350.1 Patched family protein; Swiss-Prot: sp\|O35604\|NPC1_MOUSE Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0R0G729\|A0A0R0G729_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0001400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	16
LotjaGi1g1v0001400.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT4G38350.1 Patched family protein; Swiss-Prot: sp\|O35604\|NPC1_MOUSE Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0R0G729\|A0A0R0G729_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0001400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	16
LotjaGi1g1v0436400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT1G42470.1 Patched family protein; Swiss-Prot: sp\|P56941\|NPC1_PIG Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0B2RND6\|A0A0B2RND6_GLYSO Niemann-Pick C1 protein; Found in the gene: LotjaGi1g1v0436400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF82866 SignalP-noTM TIGR00917 TMhelix TRANSMEMBRANE	21
LotjaGi1g1v0436400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT1G42470.1 Patched family protein; Swiss-Prot: sp\|P56941\|NPC1_PIG Niemann-Pick C1 protein; TrEMBL-Plants: tr\|K7KHM4\|K7KHM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0436400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 NON_CYTOPLASMIC_DOMAIN PF02460 PS50156 PTHR45727 PTHR45727:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	18
LotjaGi1g1v0436400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT1G42470.1 Patched family protein; Swiss-Prot: sp\|P56941\|NPC1_PIG Niemann-Pick C1 protein; TrEMBL-Plants: tr\|K7KHM4\|K7KHM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0436400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF82866 SignalP-noTM TIGR00917 TMhelix TRANSMEMBRANE	21
LotjaGi1g1v0436400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT1G42470.1 Patched family protein; Swiss-Prot: sp\|P56941\|NPC1_PIG Niemann-Pick C1 protein; TrEMBL-Plants: tr\|K7KHM4\|K7KHM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0436400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 NON_CYTOPLASMIC_DOMAIN PF02460 PS50156 PTHR45727 PTHR45727:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	18
LotjaGi1g1v0436400.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT1G42470.1 Patched family protein; Swiss-Prot: sp\|P56941\|NPC1_PIG Niemann-Pick C1 protein; TrEMBL-Plants: tr\|A0A0B2RND6\|A0A0B2RND6_GLYSO Niemann-Pick C1 protein; Found in the gene: LotjaGi1g1v0436400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 IPR032190 NON_CYTOPLASMIC_DOMAIN PF02460 PF16414 PS50156 PTHR45727 PTHR45727:SF5 SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	16
LotjaGi1g1v0436400.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Niemann-Pick C1 protein; TAIR: AT1G42470.1 Patched family protein; Swiss-Prot: sp\|P56941\|NPC1_PIG Niemann-Pick C1 protein; TrEMBL-Plants: tr\|K7KHM4\|K7KHM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0436400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1640.10 IPR000731 IPR003392 IPR004765 NON_CYTOPLASMIC_DOMAIN PF02460 PS50156 PTHR45727 PTHR45727:SF5 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF82866 TIGR00917 TMhelix TRANSMEMBRANE	18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TRANSMEMBRANE	Phobius	1	6.25