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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2295220 |
| Transcript ID | Lj1g3v2295220.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: niemann-Pick C1 protein-like [Glycine max] gi|356509590|ref|XP_003523530.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 6 | 21 | 16 | – | – | |
| PANTHER | 20 | 1292 | 1273 | 0 | – | |
| PANTHER | 20 | 1292 | 1273 | 0 | – | |
| Phobius | 22 | 26 | 5 | – | – | |
| Phobius | 27 | 289 | 263 | – | – | |
| Pfam | 49 | 281 | 233 | 1.20E-63 | ||
| TIGRFAM | 51 | 1273 | 1223 | 0 | ||
| TMHMM | 288 | 310 | 23 | – | – | |
| Phobius | 290 | 309 | 20 | – | – | |
| Phobius | 310 | 382 | 73 | – | – | |
| TMHMM | 382 | 404 | 23 | – | – | |
| Phobius | 383 | 402 | 20 | – | – | |
| Phobius | 403 | 630 | 228 | – | – | |
| Pfam | 455 | 909 | 455 | 2.70E-51 | ||
| SUPERFAMILY | 586 | 793 | 208 | 3.92E-18 | – | |
| Gene3D | 594 | 803 | 210 | 8.90E-26 | – | |
| TMHMM | 629 | 651 | 23 | – | – | |
| ProSiteProfiles | 630 | 793 | 164 | 40.071 | ||
| Phobius | 631 | 652 | 22 | – | – | |
| Phobius | 653 | 663 | 11 | – | – | |
| Phobius | 664 | 688 | 25 | – | – | |
| TMHMM | 664 | 686 | 23 | – | – | |
| Phobius | 689 | 693 | 5 | – | – | |
| Phobius | 694 | 719 | 26 | – | – | |
| TMHMM | 696 | 718 | 23 | – | – | |
| Phobius | 720 | 738 | 19 | – | – | |
| TMHMM | 739 | 761 | 23 | – | – | |
| Phobius | 739 | 761 | 23 | – | – | |
| Phobius | 762 | 766 | 5 | – | – | |
| Phobius | 767 | 793 | 27 | – | – | |
| TMHMM | 771 | 793 | 23 | – | – | |
| Phobius | 794 | 841 | 48 | – | – | |
| TMHMM | 841 | 863 | 23 | – | – | |
| Phobius | 842 | 865 | 24 | – | – | |
| Phobius | 866 | 1116 | 251 | – | – | |
| Pfam | 1056 | 1272 | 217 | 5.40E-32 | ||
| SUPERFAMILY | 1081 | 1273 | 193 | 3.01E-21 | – | |
| Gene3D | 1099 | 1275 | 177 | 1.20E-21 | – | |
| Phobius | 1117 | 1140 | 24 | – | – | |
| TMHMM | 1117 | 1139 | 23 | – | – | |
| Phobius | 1141 | 1146 | 6 | – | – | |
| TMHMM | 1144 | 1166 | 23 | – | – | |
| Phobius | 1147 | 1167 | 21 | – | – | |
| Phobius | 1168 | 1178 | 11 | – | – | |
| TMHMM | 1171 | 1193 | 23 | – | – | |
| Phobius | 1179 | 1200 | 22 | – | – | |
| Phobius | 1201 | 1211 | 11 | – | – | |
| Phobius | 1212 | 1237 | 26 | – | – | |
| TMHMM | 1214 | 1236 | 23 | – | – | |
| Phobius | 1238 | 1248 | 11 | – | – | |
| Phobius | 1249 | 1272 | 24 | – | – | |
| TMHMM | 1251 | 1273 | 23 | – | – | |
| Phobius | 1273 | 1292 | 20 | – | – | |
| Coils | 1292 | 1292 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid transporter activity | Enables the directed movement of lipids into, out of or within a cell, or between cells. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj1g3v2295220.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2295220.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.