Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PTHR11439:SF250

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0268800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G39960.1 Molecular chaperone Hsp40/DnaJ family protein; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|Q2HT49\|Q2HT49_MEDTR Integrase, catalytic region; Found in the gene: LotjaGi1g1v0268800_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR036397 PF00665 PS50994 PTHR11439 PTHR11439:SF250 SSF53098	9
LotjaGi1g1v0515600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00300.1 Gag-Pol-related retrotransposon family protein (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|B8YLY7\|B8YLY7_LOTJA Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0515600_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR025724 IPR036397 PF00665 PF13976 PS50994 PTHR11439 PTHR11439:SF250 SSF53098	11
LotjaGi1g1v0688500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151QUV8\|A0A151QUV8_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0688500	Domains G3DSA:3.30.420.10 IPR001584 IPR001878 IPR012337 IPR013103 IPR025314 IPR025724 IPR036397 IPR036875 IPR043502 PF00665 PF07727 PF13961 PF13976 PF14223 PS50158 PS50994 PTHR11439 PTHR11439:SF250 SSF53098 SSF56672 SSF57756 cd09272 mobidb-lite	24
LotjaGi2g1v0228900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00300.1 Gag-Pol-related retrotransposon family protein (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151RFC2\|A0A151RFC2_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0228900_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR025724 IPR036397 PF00665 PF13976 PS50994 PTHR11439 PTHR11439:SF250 SSF53098	11
LotjaGi2g1v0395400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00300.1 Gag-Pol-related retrotransposon family protein (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151TNK0\|A0A151TNK0_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0395400_LC	Domains G3DSA:3.30.420.10 IPR012337 IPR025724 IPR036397 PF13976 PTHR11439 PTHR11439:SF250 SSF53098	8
LotjaGi3g1v0145700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00300.1 Gag-Pol-related retrotransposon family protein (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151UAT2\|A0A151UAT2_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0145700_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR025724 IPR036397 PF00665 PF13976 PS50994 PTHR11439 PTHR11439:SF250 SSF53098	11
LotjaGi3g1v0274100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G24450.1 phosphoglucan, water dikinase; Swiss-Prot: sp\|P04146\|COPIA_DROME Copia protein; TrEMBL-Plants: tr\|Q6L3Q0\|Q6L3Q0_SOLDE Polyprotein, putative; Found in the gene: LotjaGi3g1v0274100_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR036397 PF00665 PTHR11439 PTHR11439:SF250 SSF53098	8
LotjaGi3g1v0311100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G12190.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A5B779\|A5B779_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0311100_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR036397 PS50994 PTHR11439 PTHR11439:SF250 SSF53098	8
LotjaGi4g1v0122500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase) (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151TAX5\|A0A151TAX5_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0122500_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR025724 IPR036397 PF00665 PF13976 PS50994 PTHR11439 PTHR11439:SF250 SSF53098 SignalP-TM mobidb-lite	13
LotjaGi4g1v0198200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A0B2QD49\|A0A0B2QD49_GLYSO Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0198200_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR036397 PF00665 PS50994 PTHR11439 PTHR11439:SF250 SSF53098	9
LotjaGi4g1v0347500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00300.1 Gag-Pol-related retrotransposon family protein (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151TNK0\|A0A151TNK0_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0347500_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR025724 IPR036397 PF00665 PF13976 PS50994 PTHR11439 PTHR11439:SF250 SSF53098	11
LotjaGi6g1v0083000_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00300.1 Gag-Pol-related retrotransposon family protein (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151U108\|A0A151U108_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0083000_LC	Domains G3DSA:3.30.420.10 IPR012337 IPR025724 IPR036397 NON_CYTOPLASMIC_DOMAIN PF13976 PTHR11439 PTHR11439:SF250 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53098 SignalP-noTM	14
LotjaGi6g1v0127800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: ATMG00300.1 Gag-Pol-related retrotransposon family protein (ChrM); Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A0B2P7I4\|A0A0B2P7I4_GLYSO Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0127800_LC	Domains G3DSA:3.30.420.10 IPR001584 IPR012337 IPR025724 IPR036397 PF00665 PF13976 PS50994 PTHR11439 PTHR11439:SF250 SSF53098	11
LotjaGi6g1v0172000_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G20980.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|P04146\|COPIA_DROME Copia protein; TrEMBL-Plants: tr\|A0A151QSA1\|A0A151QSA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0172000_LC	Domains IPR025724 PF13976 PTHR11439 PTHR11439:SF250	4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
PTHR11439:SF250	PANTHER	1	7.14