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LotjaGi1g1v0688500.1

Overview

Field Value
Gene ID LotjaGi1g1v0688500
Transcript ID LotjaGi1g1v0688500.1
Lotus japonicus genome version Gifu v1.2
Description Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151QUV8|A0A151QUV8_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0688500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:125571735..125576438) extracted from Lotus japonicus Gifu genome v1.2.

TAGAGATTAAAATATCAAATTAGTGTCTTAAAGCCGGGAACAGGATTATTTGTAATGCCTTTCTTTATGGGGAATGTGTT AGTGTCAATTGTCAAATAAGCCACCCTTTGCATTCTAAAATTTCCACTAGACTCTTCTTTATTTCTGTAACTATTATTGA CTAACACCTCAATGATTTTCTCTTCCTGCAGTTATAGTTCGTGGCGCAGGTCAACCTGTTGAGAAATTAAACACGTGCCT TGGCTGCTGCTTAGATAGTTTAGTTCAGTTTGAATGAGTCAAATAAAATATCTTCTATGAGCTGTTAGTGGAGAGATCAG TTTCTGTTTTGTTTTTAATTATAAGTAACAGTCCCTAGAATTTAGCTAGAATTAAGGAGGTTATCTCTTATCAGTTATTT TCAAGATGTATTTAAATTCAAGTTTGTGATTCAATAAAGTATTATGCTTTTGCTGCCTCATATCAGAAGTTTTACCGTTC AATCTTCTCTTCTGCTACTTTTCTATATATCAAAAACAACAATTGGTATCTAGAGCCACTTCTTACGGGACCTGTGCTAT GGATGTCGAATCAAGTTTTTCACATGTAGCTCTTCCTATCTTTGATGGGGAGAACTATGACCTTTGGGCTGTGAGAATGG AATCCTACTTGGAGGCTTTAGACCTCTGGGAAGCCGTGGAAGAAGATTATGAAATTGCTCCGTTGCCAAACAATCCCACC GTGGCCCAGATGAAAAATCACAAGGAAAGAAAAACCAAGAAGGCAAAGGCAAAGGCTTGCTTGTTTGCTGGTGTCTCAAA AACGATTTTCACCAGAATCATGACCCTCCAAACAGCAAGTGAAATCTGGAATTATCTAAAGGAAGAGTATGCAGGAGATG CCCGAATACGAAGCATGCAAGTGTTGAACTTAATACGTAAGTTCGAGCTACAAAGAATGAAGGAGTCCGAGACAGCCAAA CAATATGCTGACAAATTGCTTGGCATTGTTAACAAGGTAAGATTACTTGGCACAGAATTTCCAGATTCAAGAATTGTGCA AAAAATTCTTGTAACAATGCCTGAAAAATATGAAGCCTCTATAGCATCTTTGGAGAACACAAAGGATCTGTCACAGATCA CCTTGGCAAAAGTTTTACATGCCCTACAAGCACAAGAACAAAGAAGAATGATGAGACAAGAGGTGGCAGTAGAGGATGCT TTTCTAGCAAACAACTCGCAAGGAGGAAAGGATGAGAAGTATAACAAAAGGAAACAGTACAGCAAACCTGGAAGTTCCAA CATACAACAGAATGAGTCTTTTCCACCTTGCACATATTGCAAAAAGACAAACCATTCTCCAAGCAGATGTTGGTGGAGGC CTGACATCAAGTGCAGAAAGTGTGGCAATCTTGGACATGTAGAGCGTATCTGTAAGTCTTCAATGGAGGCAAAAGTTTCC ATGGAGCAACAAGAAGATGAGCAACTCTTTGCAGCAACATGCTTTGCAACAAGCAACAGTTCTAGTGATTTGTGGTTAAT AGACAGTGCCTGCTCAAATCATATGACTCCTGATGAAACTCTTTTTAAAGAGCTTGACAAAACCTTCACTTCCAAAGTAA AAGTTGGAAATGGTGTTTTTATCCCAGCCAAAGGAAAAGGAACGGTTGCTATTGAAAGCATAGCAGGTTTAAAATATATT TCTAATGTCTTATATGTGCCTAACATTGACCAGAATTTACTTAGTGTTGCACAGATGGCTGACAATGGCTTCAAAGTTAT ATTTGAAGGCAAATGGTGTCTGATTCAGGATGCCAAAGGCAATGATCTATTTAAAGTGAAAATGAAGGCTATAACTTATG CTCTAAATCTGATGGAGGAAGAGCAAATAGCTTTTTCAAGCACCTGCAGCAACATTGAATTATGGCACAAAAGGCTCGGA CATTTCCATCTTGCTGGACTTCAATACATGCAGAAACATGCTTTGGTGAAAGGTGTACCACGACTTGAAGACAAACTTGA TGATTGTGTAGCTTGTCAATATGGCAAGCAAGTCAGAACACCGTTTCCGCAAACAGCATGGAGAGCAACACAAAAATTGC AGCTTGTGCATACGGATGTTGGAGGACCTCAGAGAACACCATCTTTAAATGGTAATATCTATTATATTACATTTATTGAT GATTATACCAGGTTTTGTTGGATTTATTTCTTCAAATCCAAGGCTGAGGTTGCTGATATATTTTGGAAATATAAAGCCCT GGTGGAAAATCAAAGTAATTGCAGGTTGCGGACACTAAGGTCAGACAATGGGACAGAATATAAAAATAATACTTTCGACA AGTTTTGTGAAGAAGCTGGTATTGTGCACCAACTTACAGCACCTTATACTCCGCAACAAAATGGAGTTAGTGAAAGAAAG AATAGAAGCATTATGGAAATGACAAGGTGTCTTCTACATGAAAAAGAGCTGCCAAAGAAATTATGGGCAGAGGCTGCAAA TACTGTTGTCTTCTTGCTGAATAGGCTGCCTACAAGGGTTCTTCAGAGGAAAACTCCATTTGAAGCTTGGTTTGGTTACA AACCAGATTTCCATAACTTTAAAGTTTTCGGTTGTCTATGTTTCTCTTTCGTGCCACAGGTTAAAAGAGACAAGCTCGAT AAGAAGGCAGATCCTAGAGTTTTCATTGGATATAGTAGCACATCAAAAGCGTACAGAATTTTTCAACCTCAAAATGGGAA AATTCTTGTAAGCCGAGATGTCAAATTCATGGAGAACAAACAATGGAGCTGGGAGGAGTCAATGGAGAAGCAAATTCCAG AAATTCCACATATCATTGATGATGATATAGATGACTTTCCTGTCAGAGGTACAAGACCTTTACATGAAATTTATGAAAGG AGTAATGTAGCTGTCTTGGAACCTGCAGAATTCATTGAAGCTGAGAAGAACAAAAAATGGATAGATGCAATGAAGGAGGA GCTAAATATGATTGAAAAAAATGACACTTGGGTGCTAGTGGACAGACCTCAACACAAGAAACCTATAGGAGTCAAATGGG TTTATAGAACTAAGCTAAATGCAGATGGTTCTATAAATAAATACAAGGCAAGATTGGTTGTGAAGGGTTATGCTCAAGTG TTCGGAGTTGATTTTTCAGAAACGTTTGCTCCGGTTGCTCGCCTCGATACAATTAGAATGCTCCTAGCTTTGGCTGCACA GAAAGGTTGGAAAGTTTACCATTTAGATGTGAAATCTGCTTTCTTAAATGGTTATTTGCAGGAGGAGATATTTGTGGAGC AACCAGAAGGATTTCATGTCAAGGGACATGAGGAGAAGGTCTACAAACTAAAAAAGGCCTTGTATGGTCTTAAACAAGCC CCAAGGGCTTGGTACAGCAGAATCGATGATTATCTTCAAAAACTCGGATTTGTCAAAAGTCCCAGTGAAGCCACTTTGTA TGTGAAATTGATGGATGCTAATGTAATCATAGTTTCTGTCTATGTTGATGATCTGCTTGTAACAGGGAATGAAGAGAAGT TAATCTTGGAGTTTAAAGCTGAAATGCTCCAAGTATTTGAAATGACAGACCTTGGTTTGATGTCTTTCTTTTTGGGTCTG GAGGTAAAGCAAGATCAAGATGTTGTTTTCATATGCCAAAAAAAATATGCTAGAGAAATACTCAAAAAGTTTTGCATGGA GAATTGCAGTAGCACTACCACTCCAATGAATCAAAAGGAAAAATTCAGCAAAGATGATGGAGCTGATAAGGTAGATGAGC AGAAATTCAGAAGCCTAATTGGTTGTCTAATGTATCTGACTGCAACTAGACCCGACATCATGTTTTCAGTGAGTGTGTTG TCAAGATTTATGCACTGTGCTAGTGAATTACATCTCCAAGCTGCCAAACGAATTCTAAGATATGTTAAGGGGACTGCAGA CTATGGCATTAAGTACACTCACTCTCAGAGTTTTCTATTTCATGGATTTTCTGACAGTGATTGGGGTGGTTCAGTTGATG ACTTGAAAAGTACAACAGGGTACTGTTTCAGTCTTGGCTCAGGTGTGTTTTCATGGTGTTCAAGAAAGCAAGATGTAGTG GCTCAAAGTACAGCTGAGGCGGAATATGTAGCAGCTACAGCTGCTGTGAATCAAGCCATTTGGCTAAGAAAAATATTTTC TGATTTACACATGGAGCAAAGTGAGCCAACACAAATTTTTATTGACAATCAAGCTGCAATATCAATTTCAAACAATCCTG TTTTCCATGGGAAGACTAAGCATTTCAAGATCAAGTTCTTCTTCTTAAGGGAGATGCAAAGAGAAGGAGAAATCAAGTTG TTGTATTGCAAGACTGAAAATCAGAATGCTGATATCTTGACAAAGGCCCTTCCGAAGGCTAGATTTGAAGCTTTGAGATT CAGTTTGGGCATCTGCAACCTCCAAGGCAAGGAGGAGTGTTGAGAAATTAAACACGTGCCTTGGCTGCTGCTTAGATAGT TTAGTTCAGTTTGAATGAGTCAAATAAAATATCTTCTACGAGCTGTTAGTGGAGAGATCAGTTTCTGTTTTGTTTTTAAT TATAAGTAACAGTCCCTAGAATTTAGCTAGAATTAAGGAGGTTATCTCTTATCAGTTATTTTCAAGATGTATTTAAATTC AAGTTTGTGATTCAATAAAGTATTATGCTTTTGCTGCCTCATATCAGAAGTTTTACCGTTCAAT 

CDS sequence (LotjaGi1g1v0688500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGTCGAATCAAGTTTTTCACATGTAGCTCTTCCTATCTTTGATGGGGAGAACTATGACCTTTGGGCTGTGAGAAT GGAATCCTACTTGGAGGCTTTAGACCTCTGGGAAGCCGTGGAAGAAGATTATGAAATTGCTCCGTTGCCAAACAATCCCA CCGTGGCCCAGATGAAAAATCACAAGGAAAGAAAAACCAAGAAGGCAAAGGCAAAGGCTTGCTTGTTTGCTGGTGTCTCA AAAACGATTTTCACCAGAATCATGACCCTCCAAACAGCAAGTGAAATCTGGAATTATCTAAAGGAAGAGTATGCAGGAGA TGCCCGAATACGAAGCATGCAAGTGTTGAACTTAATACGTAAGTTCGAGCTACAAAGAATGAAGGAGTCCGAGACAGCCA AACAATATGCTGACAAATTGCTTGGCATTGTTAACAAGGTAAGATTACTTGGCACAGAATTTCCAGATTCAAGAATTGTG CAAAAAATTCTTGTAACAATGCCTGAAAAATATGAAGCCTCTATAGCATCTTTGGAGAACACAAAGGATCTGTCACAGAT CACCTTGGCAAAAGTTTTACATGCCCTACAAGCACAAGAACAAAGAAGAATGATGAGACAAGAGGTGGCAGTAGAGGATG CTTTTCTAGCAAACAACTCGCAAGGAGGAAAGGATGAGAAGTATAACAAAAGGAAACAGTACAGCAAACCTGGAAGTTCC AACATACAACAGAATGAGTCTTTTCCACCTTGCACATATTGCAAAAAGACAAACCATTCTCCAAGCAGATGTTGGTGGAG GCCTGACATCAAGTGCAGAAAGTGTGGCAATCTTGGACATGTAGAGCGTATCTGTAAGTCTTCAATGGAGGCAAAAGTTT CCATGGAGCAACAAGAAGATGAGCAACTCTTTGCAGCAACATGCTTTGCAACAAGCAACAGTTCTAGTGATTTGTGGTTA ATAGACAGTGCCTGCTCAAATCATATGACTCCTGATGAAACTCTTTTTAAAGAGCTTGACAAAACCTTCACTTCCAAAGT AAAAGTTGGAAATGGTGTTTTTATCCCAGCCAAAGGAAAAGGAACGGTTGCTATTGAAAGCATAGCAGGTTTAAAATATA TTTCTAATGTCTTATATGTGCCTAACATTGACCAGAATTTACTTAGTGTTGCACAGATGGCTGACAATGGCTTCAAAGTT ATATTTGAAGGCAAATGGTGTCTGATTCAGGATGCCAAAGGCAATGATCTATTTAAAGTGAAAATGAAGGCTATAACTTA TGCTCTAAATCTGATGGAGGAAGAGCAAATAGCTTTTTCAAGCACCTGCAGCAACATTGAATTATGGCACAAAAGGCTCG GACATTTCCATCTTGCTGGACTTCAATACATGCAGAAACATGCTTTGGTGAAAGGTGTACCACGACTTGAAGACAAACTT GATGATTGTGTAGCTTGTCAATATGGCAAGCAAGTCAGAACACCGTTTCCGCAAACAGCATGGAGAGCAACACAAAAATT GCAGCTTGTGCATACGGATGTTGGAGGACCTCAGAGAACACCATCTTTAAATGGTAATATCTATTATATTACATTTATTG ATGATTATACCAGGTTTTGTTGGATTTATTTCTTCAAATCCAAGGCTGAGGTTGCTGATATATTTTGGAAATATAAAGCC CTGGTGGAAAATCAAAGTAATTGCAGGTTGCGGACACTAAGGTCAGACAATGGGACAGAATATAAAAATAATACTTTCGA CAAGTTTTGTGAAGAAGCTGGTATTGTGCACCAACTTACAGCACCTTATACTCCGCAACAAAATGGAGTTAGTGAAAGAA AGAATAGAAGCATTATGGAAATGACAAGGTGTCTTCTACATGAAAAAGAGCTGCCAAAGAAATTATGGGCAGAGGCTGCA AATACTGTTGTCTTCTTGCTGAATAGGCTGCCTACAAGGGTTCTTCAGAGGAAAACTCCATTTGAAGCTTGGTTTGGTTA CAAACCAGATTTCCATAACTTTAAAGTTTTCGGTTGTCTATGTTTCTCTTTCGTGCCACAGGTTAAAAGAGACAAGCTCG ATAAGAAGGCAGATCCTAGAGTTTTCATTGGATATAGTAGCACATCAAAAGCGTACAGAATTTTTCAACCTCAAAATGGG AAAATTCTTGTAAGCCGAGATGTCAAATTCATGGAGAACAAACAATGGAGCTGGGAGGAGTCAATGGAGAAGCAAATTCC AGAAATTCCACATATCATTGATGATGATATAGATGACTTTCCTGTCAGAGGTACAAGACCTTTACATGAAATTTATGAAA GGAGTAATGTAGCTGTCTTGGAACCTGCAGAATTCATTGAAGCTGAGAAGAACAAAAAATGGATAGATGCAATGAAGGAG GAGCTAAATATGATTGAAAAAAATGACACTTGGGTGCTAGTGGACAGACCTCAACACAAGAAACCTATAGGAGTCAAATG GGTTTATAGAACTAAGCTAAATGCAGATGGTTCTATAAATAAATACAAGGCAAGATTGGTTGTGAAGGGTTATGCTCAAG TGTTCGGAGTTGATTTTTCAGAAACGTTTGCTCCGGTTGCTCGCCTCGATACAATTAGAATGCTCCTAGCTTTGGCTGCA CAGAAAGGTTGGAAAGTTTACCATTTAGATGTGAAATCTGCTTTCTTAAATGGTTATTTGCAGGAGGAGATATTTGTGGA GCAACCAGAAGGATTTCATGTCAAGGGACATGAGGAGAAGGTCTACAAACTAAAAAAGGCCTTGTATGGTCTTAAACAAG CCCCAAGGGCTTGGTACAGCAGAATCGATGATTATCTTCAAAAACTCGGATTTGTCAAAAGTCCCAGTGAAGCCACTTTG TATGTGAAATTGATGGATGCTAATGTAATCATAGTTTCTGTCTATGTTGATGATCTGCTTGTAACAGGGAATGAAGAGAA GTTAATCTTGGAGTTTAAAGCTGAAATGCTCCAAGTATTTGAAATGACAGACCTTGGTTTGATGTCTTTCTTTTTGGGTC TGGAGGTAAAGCAAGATCAAGATGTTGTTTTCATATGCCAAAAAAAATATGCTAGAGAAATACTCAAAAAGTTTTGCATG GAGAATTGCAGTAGCACTACCACTCCAATGAATCAAAAGGAAAAATTCAGCAAAGATGATGGAGCTGATAAGGTAGATGA GCAGAAATTCAGAAGCCTAATTGGTTGTCTAATGTATCTGACTGCAACTAGACCCGACATCATGTTTTCAGTGAGTGTGT TGTCAAGATTTATGCACTGTGCTAGTGAATTACATCTCCAAGCTGCCAAACGAATTCTAAGATATGTTAAGGGGACTGCA GACTATGGCATTAAGTACACTCACTCTCAGAGTTTTCTATTTCATGGATTTTCTGACAGTGATTGGGGTGGTTCAGTTGA TGACTTGAAAAGTACAACAGGGTACTGTTTCAGTCTTGGCTCAGGTGTGTTTTCATGGTGTTCAAGAAAGCAAGATGTAG TGGCTCAAAGTACAGCTGAGGCGGAATATGTAGCAGCTACAGCTGCTGTGAATCAAGCCATTTGGCTAAGAAAAATATTT TCTGATTTACACATGGAGCAAAGTGAGCCAACACAAATTTTTATTGACAATCAAGCTGCAATATCAATTTCAAACAATCC TGTTTTCCATGGGAAGACTAAGCATTTCAAGATCAAGTTCTTCTTCTTAAGGGAGATGCAAAGAGAAGGAGAAATCAAGT TGTTGTATTGCAAGACTGAAAATCAGAATGCTGATATCTTGACAAAGGCCCTTCCGAAGGCTAGATTTGAAGCTTTGAGA TTCAGTTTGGGCATCTGCAACCTCCAAGGCAAGGAGGAGTGTTGA 

Protein sequence (LotjaGi1g1v0688500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDVESSFSHVALPIFDGENYDLWAVRMESYLEALDLWEAVEEDYEIAPLPNNPTVAQMKNHKERKTKKAKAKACLFAGVS KTIFTRIMTLQTASEIWNYLKEEYAGDARIRSMQVLNLIRKFELQRMKESETAKQYADKLLGIVNKVRLLGTEFPDSRIV QKILVTMPEKYEASIASLENTKDLSQITLAKVLHALQAQEQRRMMRQEVAVEDAFLANNSQGGKDEKYNKRKQYSKPGSS NIQQNESFPPCTYCKKTNHSPSRCWWRPDIKCRKCGNLGHVERICKSSMEAKVSMEQQEDEQLFAATCFATSNSSSDLWL IDSACSNHMTPDETLFKELDKTFTSKVKVGNGVFIPAKGKGTVAIESIAGLKYISNVLYVPNIDQNLLSVAQMADNGFKV IFEGKWCLIQDAKGNDLFKVKMKAITYALNLMEEEQIAFSSTCSNIELWHKRLGHFHLAGLQYMQKHALVKGVPRLEDKL DDCVACQYGKQVRTPFPQTAWRATQKLQLVHTDVGGPQRTPSLNGNIYYITFIDDYTRFCWIYFFKSKAEVADIFWKYKA LVENQSNCRLRTLRSDNGTEYKNNTFDKFCEEAGIVHQLTAPYTPQQNGVSERKNRSIMEMTRCLLHEKELPKKLWAEAA NTVVFLLNRLPTRVLQRKTPFEAWFGYKPDFHNFKVFGCLCFSFVPQVKRDKLDKKADPRVFIGYSSTSKAYRIFQPQNG KILVSRDVKFMENKQWSWEESMEKQIPEIPHIIDDDIDDFPVRGTRPLHEIYERSNVAVLEPAEFIEAEKNKKWIDAMKE ELNMIEKNDTWVLVDRPQHKKPIGVKWVYRTKLNADGSINKYKARLVVKGYAQVFGVDFSETFAPVARLDTIRMLLALAA QKGWKVYHLDVKSAFLNGYLQEEIFVEQPEGFHVKGHEEKVYKLKKALYGLKQAPRAWYSRIDDYLQKLGFVKSPSEATL YVKLMDANVIIVSVYVDDLLVTGNEEKLILEFKAEMLQVFEMTDLGLMSFFLGLEVKQDQDVVFICQKKYAREILKKFCM ENCSSTTTPMNQKEKFSKDDGADKVDEQKFRSLIGCLMYLTATRPDIMFSVSVLSRFMHCASELHLQAAKRILRYVKGTA DYGIKYTHSQSFLFHGFSDSDWGGSVDDLKSTTGYCFSLGSGVFSWCSRKQDVVAQSTAEAEYVAATAAVNQAIWLRKIF SDLHMEQSEPTQIFIDNQAAISISNNPVFHGKTKHFKIKFFFLREMQREGEIKLLYCKTENQNADILTKALPKARFEALR FSLGICNLQGKEEC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam 15 41 27 1.4E-11
Pfam 65 204 140 9.3E-26
PANTHER 104 750 647 4.8E-180
PANTHER 104 750 647 4.8E-180
MobiDBLite 221 243 23 -
SUPERFAMILY 241 288 48 3.98E-6
ProSiteProfiles 271 287 17 8.697
Pfam 430 491 62 9.3E-13
ProSiteProfiles 493 668 176 25.386
Gene3D 498 677 180 2.3E-40
Pfam 504 620 117 2.3E-22
SUPERFAMILY 507 676 170 3.29E-45
SUPERFAMILY 807 1240 434 8.12E-32
Pfam 809 1050 242 9.6E-89
CDD 1135 1273 139 4.89164E-71

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Biological process DNA integration The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0688500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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