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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0231200 |
| Transcript ID | LotjaGi1g1v0231200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT3G48425.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q5XF07|APE1L_ARATH DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|I1JXF2|I1JXF2_SOYBN DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi1g1v0231200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54177619..54185018) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGGGCTAAGTTAACCCTTAAACCTTTAAAATATTAACACTCTTAGATACTTGCAGTCAGTATTGCAGGGATTGGTAC CTTTTTTCAAGTCTGCGAAAAAAGAGTGTTTGAGTGAGTGGTGAACTGATAGCGAAGAGCGAAGGGAGGATGAAGCGGTT TTTCAAACCAGTGGAGAAAGATTCAGATGGTTGTCGGAAGAAGCCGAGAGAGAACGACCAAGAGGAACAGGAAGAAGAAG AAGAGACCAGAAAGGAGCCCTTGAAGTTCTTAACCTGGAATGCCAACAGCTTTCTCCTTCGTGTCAAGAACAACTTGCCC GAATTCTCCAAATTCATCACCGCTTTCGATCCCGATGTCATTGCCATACAGGCATTGCCCTTCTCTCTCTTTTTCCCTTA TTTTTCTAACCATCAAATGAATGAATGAATGTGCTTAATTGTAACTTGGTAGAGTTTGTTCAGTTATTGTCAGAGAATCC ATCAACCCCTCAAATTAGTGATGTTTGGAAAAGACTCTACAATTGATTCTGACGCCAAAATCAATTCTAGGGCGAGAGTT GTTAGAAGTCCCACATTGACTAAATATATGGCACGGATAACCTTTATATAGGGTAGAACAACCCTCAACTCTTGAGCTAG CTTTTAGGTTGAGTTAGGCCTCCCAATATCCTTTCTAGGGAAAAACTTACCAAAGTAGCTTCTGGGTGCCAGAATTGATT ATGAGCATAGAACTGAGTTAACTCAATGTTATCTCTAGCTTCAAGTCAGTTCTCAAACTAAAGAAGAAAAAAACATTTTT TTAAGTTCTTGAATTATTTAAATATATGTTACCTTAGGCTAAGTCCCAACCCTCAACTCTTGAGCTAGCTTTTAGGTTGA GTTAGGCCTCCCAATATCCTTTCTAGGGAAAAACTTACCAAAGTAGCTTCTGGGTGCCAGAATTGATTATGAGCATAGAA CTGAGTTAACTCTCAATGTTATCTCTAGCTTCAAGTCAGTTCTCAAACTAAAGAAGAAAAAAACATTTTTTTAAGTTCTT GAATTATTTAAATATATGTTACCTTAGGCTAAGTCCCTACATGAATGAAAGTGACACCATGACCAGCATTTTTCAAGAAG TTAAAATGGTGTTTGGCATTAACATCAGCTAAGTGGTAAAAGATGAGGATTAATTTGGAGGTTCTGTTGTAGAGCCTCTG ACTTGGTAAGAATGCTCTGACATCAAATTTTTATTAGGAAGTGCGGATGCCTGCCGCCGGATCCAAGGGTGCACCTAAAA ATCAGGGAGAGATAAAAGATGATACAAGCTCTGCCAAGGAAGAAAAGAAGGTAGGTACCCTTGTGGCCTTGTCTCCTTCT GCAATATGTGGAGCGGTAGCGCCAATTGGGTTTGTTAATATTTGTCTAGTTTACTTTTTTATTCTCTGTATTTATAACTG ATTTTTATGATTCCATCACTAGGTAAAAGGGAATTTGTATTGCATCTTGTATCCTTTCTTTATACATGCATGTTTCAGTC TGTTATTTAATATGAATGAAACGTAGAGGGAGTGGCATTTGAGAATACCATGAAAAACTAGTCATATAGGAACTGCTCCC ACCTGAAACCTGCAAGGCCACTACAACTCCTAAGTCAGAGCATGATAAATGTGGTTAAAGGTTGTTTGGCAATAGTACAT TGTAAGAGGAAGATGGCTTGCCGGGGGAGGGTGGGCTGGGGTGCAATGGCACCTCCTCTCCATTATTGCAAATTTGCAAT GATTTGAATGACATAAAAAGCACAGCCTCTTATTCTGCTAGAGAAGTGCATCTCTCTAACACACAAATAACAAGAAAAGA CGCACCTCTCTGCCTTGGTGTTCTCATTCAGAGCTACAAGTTCCCATATTTTATTGTATGATCAGGTTAAATGACATGAA CTTATGAGGCTGGAAATATGAAGGATATAGTGTTATCACATCAATGTTGCACTTGAATTCTGATTGGTCTTTGAGATACT TGAGCTAGAAAGGGGGTTGTCCAAATCTTTTTGTAATGGTATGCATGGTCAATGATCAACTCAATTAAAAGCGCAAACTG TTATGCGAAGACTCATGAATGGCTTTATTACATCTTTAACTCATTCCTTCATGCAAAATTCTTTTTGGGCTTAAAGCGTG GACAATGCACATTTCTAATGTGACTTATTGCTTAAATTCAACTTTTATTTACAAGAATAAGGGTGGCAAGGATCAAAATC CAGATTTTATGACATGCATTAACAATACTTCTTCACAATATTGTTATGGTAAATTGATATATTCATCATACTACTTTCTA AAACTTTAGAACATGTATTCAAACTTATGCAGATATTGATGCGTGCACTTTCAAGTCCACCTTTTGGGAGCTATCGTATT TGGTGGTCTCTCGCAGATTCAAAATATGCAGGGACAGCTCTACTTGTAAAAAAATGCTTCAAGCCAAAAAGTGTAGTTTT CAATCTTGATAAAATAGGTACCCTTCTTATTGTATTCATGGAATTTAATATTTTATTTATTTATACCTAAATATTTTCAG GATTCATATGATAGATATCATCAAAAGAATAATTGGAGAGACTCAGCCACTCACCCCATGTGCTGAACCCCCTAAACTCT CTATTTATAGGCAACATGCCTCACTCACTAACCCACCCACTAATTAACTGACACTCTCACTAATTGAGTGTCTAACAGAA TTACATTTCCTTATTTTACAATTAGGAGTAGGAATAAATTATGAGACTTGTTGGGAATCTACAGCCCAACTTACATTAAG CCTAGGTAAACCCTAATTATTAAATAAATCAGGTCAAGGCTTTGTTAAGAACCTATTTAGTTAAAAAGGTCAGGTTTAAG GCCATCTAGAAAGCCTTTTAGGCCTGACAGGTTAGCATATTACAAATATATTACTATTATAGTCATTGCTATGATTATTG TATTGGATTTTTATTATAATATCCTGAAATATATACTTATTGACTTATTTAAATATTTAAATATGTTACTGATAGAGCGC AGTCCAACCCTTTTAAAGACTCGCAGTTAGGGTCAAGTTCCTCTTTATTCTTATTCGGGTTTTAAAGCTGATCCAGTCGT CAAATTCTGTTATTGTTATCATATTAGTTAACCTATATAAAAATTTGAGCTTATAAGTTTATTCTCTATTCAGAGATATA CTTGTGATCTATTCAAATACCTTTTTATGAAGTAGATTTTTAACTAGGCTTTCAGGCTATGGCAGACTTTTAAATAGGCT AGGCCATACCTTGAAAAATTGTCTATATGAAGCCAACAAGTCAAGCTGAGGTCTTAAGTTTGGGATGTAGGTTGATTCAA ACATTAGAAAGGTCAGTGTAGCCCAGCCTATTTCCATCCCTGTGTATTTTTTTGTTTTAATATAGAAAATATATAATAAT ATTTTGGTTCTTAAAATTTTTTACCATTAAAAATTCCGGACATATTATTGAAGATTTCAGTTCTTTTTTTAAATGAAATT TAGATGTCATATCAGCAGAGAATTTTTCTGAAATAAATTTTCAACACTTATCGCATTGGATCATATTCCATGTTTGGTTT TCCGCTGATGGATCCTTTTTTTGTTGTTGTTGTTGTCAGCTTCAAAGCATGAACCCGATGGCCGAGTAATCTTAGCTGAA TTTGAAACACTTCGTTTATTGAATACGTATGTACCAAATAATGGATGGAAAGAGGAGGCAAACTCATTTCAGAGGCGAAG AAAATGGGACAAAAGGATTCTGGAATTTGTTACACAAAATTCAGACAAGCCATTGATATGGTGTGGGGATCTGAATGTCA GGTGACTAATCTCCAATTTTTCTTTTGGCTTGGGGGTATAGGATTAATTAGGTCCATCCTCTCTGTTTGTCAAGTTACTT TTATCTATTGCATTGTTTTATTATTAAATTCTAGCTGAGTTAACCTTAGCTGTTGGATGCATCTAGTTTTTTATCCATAA GTTTAAGTGGAGTACTGAGAATCATGTTTTATTTCAATTTGATGCATCCATATGCATTATATGAAACTATTTTATTGCTG CTACACTTGGATTCTTATTAGATTTTAGATGTAGTTTTACCCAGCCTGAAAGCATTTTCACAGTTGTCACGAACTTAAAC TCTTATAGATAAATAATTTTGGACTTTTCTAATTTTAGTATCTTCTACTAGAGGATTGTTTTGAATGTTGCATGGATTTT TTTTTTTTAGTTTTATCTATGTGATTAGTGTCTGTCTAGTGTCTAGTGTCTGTCTACTAGACAGACACTAATCTAATCTG TCTACTAATGCATCTACACTTTCTAAGAAGCTTTATATATAGATATTCATCTTGTGCAGCCATGAAGAGATTGATGTGAG TCATCCAGAGTTTTTTTCTGCAGCAAAACTCAACGGTTATGTTCCTCCAAATGAAGAGGTCTAAGCAATTTACTCTTGAA GTTCCTTTTAAAATAAAATTAATCTGTATTAACTTTAATAGATTTGTCTCCTAAGACGCTTAAGCTATTAGGTACAGGCC AAGAATGGTTTTACATCTGACTAACATGCTCCTTCACGCAAGCCCATGCTTGAGGCGTGGACAATGCCTTGCTGAATTTT AATTTAATTATGAAGGAAGGATGTGTGAAGGATCAATTATTAAATACTCGTTCATAGATTCTTTGAATATATTGTGAAGG ACTAATTCTCCAAAAAGCTTAATCTATTATGTAGAGGTCCAATAATGGTTTTATATCTCTAACCATTTAAATCGAGTAGC CTAGTATATCATCTAAATAGTAATTAAACATCTTCTGGTATGGCTTTGTGCAGGATTGTGGGCAGCCTGGTTTTACCTTG GCTGAAAGAAGAAGATTTGGTACCATCTTAAGAGAGTGAGTGATCTCATAATTCTTTTGGTTTATTGATTTCTATTACCT ATAACATCAACATTCAACATGGAAAAACCGCATACCTTGAACTTGTTTAATGCTTGGTTGGTAACTAACTTGATGAAGAG ATAGATTGTTAAGATCCAATAGTGTATGTTGTGTCACAATGTTTAAGCCTTTAGAAGTGAATTTTTTTTAGCATTTGGTA CAAATTGTAATACCTAATTTTTAATCAATTTTCATTGCGAAAGTTATTATTTTATTGAAAAAGTATTTACGCGACCTATC TATAATCTTTTTTAACATTTAAGTCCATTTCAATAAGACCTGCCTATCTTGCAATAACAGTTGAGTCCACTAAAACCACC GGTCGGCATTGCTGGTACACAATAGTCCTTTGGACTAGAAGCATGGACAATGCATAGGCCTTCCTATCTTGTATTTAAAT TCAACTTTGTATTAGAAGAATTGGGTGGCCATGATTGATCTTCAGACAATTTGGTCGTAGAGGCTTTAATACCTTTATAA ACCAAGTATCGCAAAAGTTTAAGCTATTTAGTGAAGACACATATTTGGTTTTTATATATCATATTTCTAACACGACATTT TGTAGAAGAGGAAACCCTCAGAACGAGAACCATCTCCTTTTTCTGTTCAGATTTTGTTTTACCAATTATAGTTTCATTCT TTTACTTTCTCCCATATTATGCTTCAATTCTTGTTTGTGCGTTTGTAACACATTTATTCTGTAGTTAATATTGTTCTGAT TGTTTTGAATAAGTTTGCGAAGTCTGTGTTTTCTTTTAGTTGTCAAGACAATGACAACTAAAAAGAAATAAAAAATATTC TCTTGCAAGTTTCAACATAGTTTGACTTGTTTCTGCTTGTAACAATCCTCATCACCGTCTTTTACCCTTTACTTTGAATT TCCTTTTATTGATTTAAAAGTCTTAATAACTGACACTATGGAACATGCTTCAGGGGGAAGCTGGTAGATGCATACAGATT TCTGCACAAGGATAAGGATATGGAACGAGGTTTCTCATGGTCTGGAAATCCAGTTGGAAAGTAAGAAATTGAATTTTTTT TTATTATACTATTAGGATTGGTTCTCGACATGGTTACTGATTAACAACTGGGTGTGTTGAGGCAATGCACTTGAATAATT TAAAATACATTTCTGGCTTTTTCCTCATAACCATTATTCATTTTGCACTTTTTCCTTTTACAAAGGAATCCTTTGTAATA GCTGATAAAGTGTTTGGTGAGTTACAAATATAAGGAATGAGATTCTTTTGATGCTTGTGTCTATTTAATAAAACTTGTTG ATTGATTCAGTTGACAGCTTTGCCCTGTCTGCTCATTTCTTTGCAGGTATCGTGGAAAGCGGATGAGAATAGACTATTTT ATAGTTTCAGAAAATTTTAAAGAAAAGATTGTTGCATGTGAAATGCATGGACAGGGGATAGAGTTGCAAGGTGAGTTTAT TGTCATGCGATTGTTACTTCTTTTTGGCTGCATATTCAACAAAATTTGAAATTCATGATTTTTCTTGCTAATTCTCCTTT AGCTTATTTGCCAAGTTAAAATCTGAAACCAGACTGATACTTGTGGTAATTGGTGCTGCTGATTTGAATCTATCATGAAC CAACTATTCCAAAAGTTTATTGGGTGACGACACAGGAATGGGTTTATATTATACTTGTAACATGCTCTCTCACGCTAGAG TCTACTGGGCCATATTCCCTGTGCTGAAATTTAACTTTTTTTTGTTACACTAATTGAGGCAACAATGCACAAGACTACTT GGTCACAGAGGCGAGGATACCATGTCCTGAAGCCATGAACCAACTATCTCAAAAGTTTAAGTTGCTAGGTGAAGACACAT GAATGATTTTACTTGTAGTAGTATCTAACCTATTTAAGAAGCTTGCCTAAAATTAGCCTTGCTTGATTTTCGTATGCATG ATTTTAATTTTGGGTGGGGGGGGGCGGCTCACATCCATGAGTTGGTTATGCATATCTCGCCATTGTATGAATAAGTGATT GGTTGGGCCAATGAAAACATTTCTCGTTGGTTGTTTTTATGGCTTGCTAAAAATTAGTTTTATTCTGATTTTCTTATGTA TGAGTTGATTGTCCTCATTGTTTTTCAATCAGTCGTAAACTGCTTATATTCTAACAAGCATGGAATTGTTCTTGTCTCCA CAGGTTTTTATGGAAGTGATCATTGTCCAGTTACCTTGGAGTTCTCTCCTAGTTCCAACTCTCAAAATGAGGAGCAAGTA TAAGAAGCACTTTACTGTTCATGTTTTAAAGACACTTGTCATGATTTTTGTTCTTGTTTAATTTATTTTGCAGTGTTTTA GATGCTGAACTGAACGTTTCATTAGTAACTAAATATTTTTAACTATCCTTCTGTGGCAAGAACTAGCTGCATAATGAATT CGCACTGAAAATTTAATAGTACTGACACACTACCTCCGAC
CDS sequence (LotjaGi1g1v0231200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCGGTTTTTCAAACCAGTGGAGAAAGATTCAGATGGTTGTCGGAAGAAGCCGAGAGAGAACGACCAAGAGGAACA GGAAGAAGAAGAAGAGACCAGAAAGGAGCCCTTGAAGTTCTTAACCTGGAATGCCAACAGCTTTCTCCTTCGTGTCAAGA ACAACTTGCCCGAATTCTCCAAATTCATCACCGCTTTCGATCCCGATGTCATTGCCATACAGGAAGTGCGGATGCCTGCC GCCGGATCCAAGGGTGCACCTAAAAATCAGGGAGAGATAAAAGATGATACAAGCTCTGCCAAGGAAGAAAAGAAGATATT GATGCGTGCACTTTCAAGTCCACCTTTTGGGAGCTATCGTATTTGGTGGTCTCTCGCAGATTCAAAATATGCAGGGACAG CTCTACTTGTAAAAAAATGCTTCAAGCCAAAAAGTGTAGTTTTCAATCTTGATAAAATAGCTTCAAAGCATGAACCCGAT GGCCGAGTAATCTTAGCTGAATTTGAAACACTTCGTTTATTGAATACGTATGTACCAAATAATGGATGGAAAGAGGAGGC AAACTCATTTCAGAGGCGAAGAAAATGGGACAAAAGGATTCTGGAATTTGTTACACAAAATTCAGACAAGCCATTGATAT GGTGTGGGGATCTGAATGTCAGCCATGAAGAGATTGATGTGAGTCATCCAGAGTTTTTTTCTGCAGCAAAACTCAACGGT TATGTTCCTCCAAATGAAGAGGATTGTGGGCAGCCTGGTTTTACCTTGGCTGAAAGAAGAAGATTTGGTACCATCTTAAG AGAGGGGAAGCTGGTAGATGCATACAGATTTCTGCACAAGGATAAGGATATGGAACGAGGTTTCTCATGGTCTGGAAATC CAGTTGGAAAGTATCGTGGAAAGCGGATGAGAATAGACTATTTTATAGTTTCAGAAAATTTTAAAGAAAAGATTGTTGCA TGTGAAATGCATGGACAGGGGATAGAGTTGCAAGGTTTTTATGGAAGTGATCATTGTCCAGTTACCTTGGAGTTCTCTCC TAGTTCCAACTCTCAAAATGAGGAGCAAGTATAA
Protein sequence (LotjaGi1g1v0231200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRFFKPVEKDSDGCRKKPRENDQEEQEEEEETRKEPLKFLTWNANSFLLRVKNNLPEFSKFITAFDPDVIAIQEVRMPA AGSKGAPKNQGEIKDDTSSAKEEKKILMRALSSPPFGSYRIWWSLADSKYAGTALLVKKCFKPKSVVFNLDKIASKHEPD GRVILAEFETLRLLNTYVPNNGWKEEANSFQRRRKWDKRILEFVTQNSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKLNG YVPPNEEDCGQPGFTLAERRRFGTILREGKLVDAYRFLHKDKDMERGFSWSGNPVGKYRGKRMRIDYFIVSENFKEKIVA CEMHGQGIELQGFYGSDHCPVTLEFSPSSNSQNEEQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 5 | 350 | 346 | 1.7E-172 | – | |
| PANTHER | 5 | 350 | 346 | 1.7E-172 | ||
| Gene3D | 6 | 346 | 341 | 1.4E-71 | ||
| SUPERFAMILY | 38 | 346 | 309 | 1.01E-45 | ||
| TIGRFAM | 38 | 345 | 308 | 2.4E-44 | ||
| ProSiteProfiles | 38 | 347 | 310 | 40.258 | ||
| CDD | 38 | 345 | 308 | 9.59969E-100 | – | |
| Pfam | 41 | 338 | 298 | 1.6E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
Expression pattern of LotjaGi1g1v0231200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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