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Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT5G13630.1 magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH); Swiss-Prot: sp|O93209|POL_FFV Pro-Pol polyprotein; TrEMBL-Plants: tr|A0A061EVN4|A0A061EVN4_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi1g1v0089800_LC | 5 | ||
– | Retrotransposable element Tf2; TAIR: AT2G14080.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A151SYD4|A0A151SYD4_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0222800_LC | 4 | ||
– | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A1B5Z8G7|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0229300_LC | 30 | ||
– | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G42580.1 tetratricopetide-repeat thioredoxin-like 3; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi1g1v0229600_LC | 21 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT5G46470.1 disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S801|A0A151S801_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi1g1v0245200_LC | 8 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A061GA43|A0A061GA43_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi1g1v0269400_LC | 12 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A061GA43|A0A061GA43_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi1g1v0269400_LC | 13 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A061GA43|A0A061GA43_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi1g1v0269400_LC | 12 | ||
– | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G33560.1 Disease resistance protein (CC-NBS-LRR class) family; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|Q949K9|Q949K9_CICAR Putative polyprotein; Found in the gene: LotjaGi2g1v0058800_LC | 8 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A061GA43|A0A061GA43_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi2g1v0078000_LC | 12 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A061GA43|A0A061GA43_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi2g1v0078000_LC | 13 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A061GA43|A0A061GA43_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi2g1v0078000_LC | 11 | ||
– | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi2g1v0102500_LC | 16 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G66980.1 suppressor of npr1-1 constitutive 4; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|Q949K9|Q949K9_CICAR Putative polyprotein; Found in the gene: LotjaGi2g1v0208500_LC | 9 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT4G15810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A072VIL9|A0A072VIL9_MEDTR B3 DNA-binding domain protein; Found in the gene: LotjaGi3g1v0258400_LC | 4 | ||
– | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G14080.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi3g1v0306100_LC | 16 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT2G14080.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151QLE6|A0A151QLE6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi3g1v0306700_LC | 13 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151QY80|A0A151QY80_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0044500_LC | 10 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT4G21323.1 Subtilase family protein; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0V0IPG6|A0A0V0IPG6_SOLCH Putative DNA/RNA polymerases superfamily protein-like; Found in the gene: LotjaGi4g1v0156100_LC | 9 | ||
– | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G53520.3 UDP-glucuronic acid decarboxylase 1; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RID1|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0183100_LC | 9 | ||
– | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi4g1v0185500_LC | 26 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A072UJW9|A0A072UJW9_MEDTR IPP transferase; Found in the gene: LotjaGi4g1v0185500_LC | 4 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A072UJW9|A0A072UJW9_MEDTR IPP transferase; Found in the gene: LotjaGi4g1v0185500_LC | 4 | ||
– | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT5G54690.1 galacturonosyltransferase 12; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151SYU9|A0A151SYU9_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi4g1v0206700_LC | 9 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RZR6|A0A151RZR6_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi5g1v0001700_LC | 13 | ||
– | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G53520.3 UDP-glucuronic acid decarboxylase 1; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RID1|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi5g1v0149900_LC | 9 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A151RR28|A0A151RR28_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi5g1v0166000_LC | 13 | ||
– | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RZR6|A0A151RZR6_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi5g1v0166000_LC | 27 | ||
– | Retrotransposon protein, Ty3-gypsy subclass, putative; TAIR: AT5G45440.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0V0IPG6|A0A0V0IPG6_SOLCH Putative DNA/RNA polymerases superfamily protein-like; Found in the gene: LotjaGi5g1v0171900_LC | 9 | ||
– | Retrotransposable element Tf2; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A151RR28|A0A151RR28_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi5g1v0192200_LC | 7 | ||
– | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT5G43450.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|Q949K9|Q949K9_CICAR Putative polyprotein; Found in the gene: LotjaGi5g1v0201700_LC | 9 | ||
– | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G46470.1 disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|Q949K9|Q949K9_CICAR Putative polyprotein; Found in the gene: LotjaGi6g1v0104300_LC | 7 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
PTHR46148:SF14 | PANTHER | 1 | 3.13 |