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PF17917

Source: Pfam

Description

RNase H-like domain found in reverse transcriptase

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 43

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0041900_LC.1
– Retrovirus-related Pol polyprotein from transposon 297 family; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151R7X5|A0A151R7X5_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0041900_LC
Domains
11
LotjaGi1g1v0100200_LC.1
– Gypsy/Ty3 element polyprotein, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0100200_LC
Domains
26
LotjaGi1g1v0153800_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151QNT0|A0A151QNT0_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0153800_LC
Domains
30
LotjaGi1g1v0225500_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi1g1v0225500_LC
Domains
22
LotjaGi1g1v0229300_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A1B5Z8G7|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0229300_LC
Domains
30
LotjaGi1g1v0229600_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G42580.1 tetratricopetide-repeat thioredoxin-like 3; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi1g1v0229600_LC
Domains
21
LotjaGi1g1v0243200_LC.1
– Polyprotein; TAIR: AT4G11670.1 DNA topoisomerase 4 subunit B (DUF810); Swiss-Prot: sp|P09523|POL_FMVD Enzymatic polyprotein; TrEMBL-Plants: tr|A0A151QZI3|A0A151QZI3_CAJCA Enzymatic polyprotein; Found in the gene: LotjaGi1g1v0243200_LC
Domains
10
LotjaGi1g1v0281700_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A1B5Z8G7|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0281700_LC
Domains
45
LotjaGi1g1v0548500_LC.1
– Pol polyprotein; TAIR: AT1G24090.1 RNase H family protein; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A151SC61|A0A151SC61_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi1g1v0548500_LC
Domains
21
LotjaGi1g1v0732800_LC.1
– Retrovirus-related Pol polyprotein from transposon opus; TAIR: AT1G66400.1 calmodulin like 23; Swiss-Prot: sp|Q91DM0|POLG_PVCV1 Genome polyprotein; TrEMBL-Plants: tr|A0A151SS76|A0A151SS76_CAJCA Polyprotein; Found in the gene: LotjaGi1g1v0732800_LC
Domains
8
LotjaGi2g1v0078500_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT5G07670.1 RNI-like superfamily protein; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi2g1v0078500_LC
Domains
27
LotjaGi2g1v0101900.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi2g1v0101900
Domains
21
LotjaGi2g1v0116300_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi2g1v0116300_LC
Domains
43
LotjaGi2g1v0208700_LC.1
– Pol polyprotein; TAIR: AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P23074|POL_SFV1 Pro-Pol polyprotein; TrEMBL-Plants: tr|A0A151U9S6|A0A151U9S6_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi2g1v0208700_LC
Domains
21
LotjaGi2g1v0341800_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A061EEM4|A0A061EEM4_THECC Retrotransposon protein, putative; Found in the gene: LotjaGi2g1v0341800_LC
Domains
18
LotjaGi3g1v0220000_LC.1
– Retrovirus-related Pol polyprotein from transposon 17.6; TAIR: AT5G46150.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; Swiss-Prot: sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus; TrEMBL-Plants: tr|A0A151SMQ4|A0A151SMQ4_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi3g1v0220000_LC
Domains
7
LotjaGi3g1v0258400_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151QNT0|A0A151QNT0_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0258400_LC
Domains
26
LotjaGi3g1v0264300_LC.1
– Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0L9TXH6|A0A0L9TXH6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0264300_LC
Domains
30
LotjaGi3g1v0306700_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0306700_LC
Domains
32
LotjaGi3g1v0422000_LC.1
– Polyprotein; TAIR: AT4G11670.1 DNA topoisomerase 4 subunit B (DUF810); Swiss-Prot: sp|P09523|POL_FMVD Enzymatic polyprotein; TrEMBL-Plants: tr|A0A151QZI3|A0A151QZI3_CAJCA Enzymatic polyprotein; Found in the gene: LotjaGi3g1v0422000_LC
Domains
10
LotjaGi4g1v0044600_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151RHD2|A0A151RHD2_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi4g1v0044600_LC
Domains
14
LotjaGi4g1v0123700_LC.1
– Polyprotein; TAIR: AT3G63290.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|P03556|POL_CAMVD Enzymatic polyprotein; TrEMBL-Plants: tr|A0A151TBV3|A0A151TBV3_CAJCA Enzymatic polyprotein; Found in the gene: LotjaGi4g1v0123700_LC
Domains
9
LotjaGi4g1v0159700_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A151RZR6|A0A151RZR6_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0159700_LC
Domains
30
LotjaGi4g1v0171300_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151QNT0|A0A151QNT0_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0171300_LC
Domains
30
LotjaGi4g1v0185500_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi4g1v0185500_LC
Domains
24
LotjaGi4g1v0185500_LC.2
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi4g1v0185500_LC
Domains
26
LotjaGi4g1v0191400_LC.1
– Retrovirus-related Pol polyprotein from transposon 297 family; Swiss-Prot: sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus; TrEMBL-Plants: tr|A0A151UAA1|A0A151UAA1_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi4g1v0191400_LC
Domains
7
LotjaGi4g1v0214500_LC.1
– Retrovirus-related Pol polyprotein from transposon 17.6; TAIR: AT3G55360.1 3-oxo-5-alpha-steroid 4-dehydrogenase family protein; Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151SV10|A0A151SV10_CAJCA Retrovirus-related Pol polyprotein from transposon opus; Found in the gene: LotjaGi4g1v0214500_LC
Domains
10
LotjaGi4g1v0218000_LC.1
– Polyprotein; TAIR: AT4G11670.1 DNA topoisomerase 4 subunit B (DUF810); Swiss-Prot: sp|P05400|POL_CERV Enzymatic polyprotein; TrEMBL-Plants: tr|A0A151QZI3|A0A151QZI3_CAJCA Enzymatic polyprotein; Found in the gene: LotjaGi4g1v0218000_LC
Domains
10
LotjaGi4g1v0300100_LC.1
– Pol polyprotein; TAIR: AT1G24090.1 RNase H family protein; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151R4E2|A0A151R4E2_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0300100_LC
Domains
20
LotjaGi5g1v0082100_LC.2
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151U7M3|A0A151U7M3_CAJCA Retrovirus-related Pol polyprotein from transposon 297 family; Found in the gene: LotjaGi5g1v0082100_LC
Domains
14
LotjaGi5g1v0126700_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0126700_LC
Domains
22
LotjaGi5g1v0200800_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G17250.1 receptor like protein 3; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A151R7E6|A0A151R7E6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi5g1v0200800_LC
Domains
25
LotjaGi5g1v0277700_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0277700_LC
Domains
22
LotjaGi6g1v0065300_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi6g1v0065300_LC
Domains
22
LotjaGi6g1v0125700_LC.1
– Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi6g1v0125700_LC
Domains
22
LotjaGi6g1v0142400_LC.1
– Retrovirus-related Pol polyprotein from transposon gypsy; TAIR: AT3G11950.1 TRAF-like superfamily protein; Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A1J7GG45|A0A1J7GG45_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0142400_LC
Domains
9
LotjaGi6g1v0151700_LC.1
– Retrovirus-related Pol polyprotein from transposon 297 family; TAIR: AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9HSF6|RNH_HALSA Ribonuclease HI; TrEMBL-Plants: tr|A0A151U9S6|A0A151U9S6_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi6g1v0151700_LC
Domains
20
LotjaGi6g1v0218100_LC.1
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
42
LotjaGi6g1v0218100_LC.2
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
42
LotjaGi6g1v0218100_LC.3
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
42
LotjaGi6g1v0218100_LC.4
– Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC
Domains
42
LotjaGi6g1v0364400_LC.1
– Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT4G36690.3 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0364400_LC
Domains
19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd09274 CDD 1 2.33