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IPR041373 is a Reverse transcriptase, RNase H-like domain.
<p>DNA polymerase and ribonuclease H (RNase H) activities allow reverse transcriptases to convert the single-stranded retroviral RNA genome into double-stranded DNA, which is integrated into the host chromosome during infection [[cite:PUB00030812]]. This domain can also be found in animal retrotransposon-like proteins [[cite:PUB00091629]].</p> <p>This entry represents an RNase H-like domain found in a group of reverse transcriptases, including those transcribed as part of an enzymatic polyprotein.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Retrovirus-related Pol polyprotein from transposon 297 family; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151R7X5|A0A151R7X5_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0041900_LC | 11 | ||
| – | Gypsy/Ty3 element polyprotein, putative; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0100200_LC | 26 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151QNT0|A0A151QNT0_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0153800_LC | 30 | ||
| – | Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi1g1v0225500_LC | 22 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A1B5Z8G7|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0229300_LC | 30 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G42580.1 tetratricopetide-repeat thioredoxin-like 3; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi1g1v0229600_LC | 21 | ||
| – | Polyprotein; TAIR: AT4G11670.1 DNA topoisomerase 4 subunit B (DUF810); Swiss-Prot: sp|P09523|POL_FMVD Enzymatic polyprotein; TrEMBL-Plants: tr|A0A151QZI3|A0A151QZI3_CAJCA Enzymatic polyprotein; Found in the gene: LotjaGi1g1v0243200_LC | 10 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A1B5Z8G7|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0281700_LC | 45 | ||
| – | Pol polyprotein; TAIR: AT1G24090.1 RNase H family protein; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A151SC61|A0A151SC61_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi1g1v0548500_LC | 21 | ||
| – | Retrovirus-related Pol polyprotein from transposon opus; TAIR: AT1G66400.1 calmodulin like 23; Swiss-Prot: sp|Q91DM0|POLG_PVCV1 Genome polyprotein; TrEMBL-Plants: tr|A0A151SS76|A0A151SS76_CAJCA Polyprotein; Found in the gene: LotjaGi1g1v0732800_LC | 8 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT5G07670.1 RNI-like superfamily protein; Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi2g1v0078500_LC | 27 | ||
| – | Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi2g1v0101900 | 21 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi2g1v0116300_LC | 43 | ||
| – | Pol polyprotein; TAIR: AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P23074|POL_SFV1 Pro-Pol polyprotein; TrEMBL-Plants: tr|A0A151U9S6|A0A151U9S6_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi2g1v0208700_LC | 21 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A061EEM4|A0A061EEM4_THECC Retrotransposon protein, putative; Found in the gene: LotjaGi2g1v0341800_LC | 18 | ||
| – | Retrovirus-related Pol polyprotein from transposon 17.6; TAIR: AT5G46150.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; Swiss-Prot: sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus; TrEMBL-Plants: tr|A0A151SMQ4|A0A151SMQ4_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi3g1v0220000_LC | 7 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151QNT0|A0A151QNT0_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0258400_LC | 26 | ||
| – | Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0L9TXH6|A0A0L9TXH6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0264300_LC | 30 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151S2S3|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0306700_LC | 32 | ||
| – | Polyprotein; TAIR: AT4G11670.1 DNA topoisomerase 4 subunit B (DUF810); Swiss-Prot: sp|P09523|POL_FMVD Enzymatic polyprotein; TrEMBL-Plants: tr|A0A151QZI3|A0A151QZI3_CAJCA Enzymatic polyprotein; Found in the gene: LotjaGi3g1v0422000_LC | 10 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151RHD2|A0A151RHD2_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi4g1v0044600_LC | 14 | ||
| – | Polyprotein; TAIR: AT3G63290.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|P03556|POL_CAMVD Enzymatic polyprotein; TrEMBL-Plants: tr|A0A151TBV3|A0A151TBV3_CAJCA Enzymatic polyprotein; Found in the gene: LotjaGi4g1v0123700_LC | 9 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr|A0A151RZR6|A0A151RZR6_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0159700_LC | 30 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151QNT0|A0A151QNT0_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0171300_LC | 30 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi4g1v0185500_LC | 24 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151UHI6|A0A151UHI6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi4g1v0185500_LC | 26 | ||
| – | Retrovirus-related Pol polyprotein from transposon 297 family; Swiss-Prot: sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus; TrEMBL-Plants: tr|A0A151UAA1|A0A151UAA1_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi4g1v0191400_LC | 7 | ||
| – | Retrovirus-related Pol polyprotein from transposon 17.6; TAIR: AT3G55360.1 3-oxo-5-alpha-steroid 4-dehydrogenase family protein; Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151SV10|A0A151SV10_CAJCA Retrovirus-related Pol polyprotein from transposon opus; Found in the gene: LotjaGi4g1v0214500_LC | 10 | ||
| – | Polyprotein; TAIR: AT4G11670.1 DNA topoisomerase 4 subunit B (DUF810); Swiss-Prot: sp|P05400|POL_CERV Enzymatic polyprotein; TrEMBL-Plants: tr|A0A151QZI3|A0A151QZI3_CAJCA Enzymatic polyprotein; Found in the gene: LotjaGi4g1v0218000_LC | 10 | ||
| – | Pol polyprotein; TAIR: AT1G24090.1 RNase H family protein; Swiss-Prot: sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151R4E2|A0A151R4E2_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0300100_LC | 20 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151U7M3|A0A151U7M3_CAJCA Retrovirus-related Pol polyprotein from transposon 297 family; Found in the gene: LotjaGi5g1v0082100_LC | 14 | ||
| – | Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0126700_LC | 22 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G17250.1 receptor like protein 3; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A151R7E6|A0A151R7E6_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi5g1v0200800_LC | 25 | ||
| – | Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0277700_LC | 22 | ||
| – | Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi6g1v0065300_LC | 22 | ||
| – | Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi6g1v0125700_LC | 22 | ||
| – | Retrovirus-related Pol polyprotein from transposon gypsy; TAIR: AT3G11950.1 TRAF-like superfamily protein; Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A1J7GG45|A0A1J7GG45_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0142400_LC | 9 | ||
| – | Retrovirus-related Pol polyprotein from transposon 297 family; TAIR: AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9HSF6|RNH_HALSA Ribonuclease HI; TrEMBL-Plants: tr|A0A151U9S6|A0A151U9S6_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi6g1v0151700_LC | 20 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC | 42 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC | 42 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC | 42 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A061FHZ8|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC | 42 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT4G36690.3 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0364400_LC | 19 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd09274 | CDD | 1 | 2.33 |