Domain Predictions — View

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TIGR00463

Source: TIGRFAM

Description

gltX_arch: glutamate--tRNA ligase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000166 View details of GO:0000166 AmiGO InterPro QuickGO	Molecular function	Nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.	Subterm of GO:0036094 GO:1901265
GO:0004818 View details of GO:0004818 AmiGO InterPro QuickGO	Molecular function	Glutamate-tRNA ligase activity	Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu).	Subterm of GO:0004812
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of GO:0008144 GO:0032559 GO:0035639
GO:0005737 View details of GO:0005737 AmiGO InterPro QuickGO	Cellular component	Cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	Subterm of GO:0044424
GO:0006424 View details of GO:0006424 AmiGO InterPro QuickGO	Biological process	Glutamyl-tRNA aminoacylation	The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. The glutamyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a glutamic acid-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.	Subterm of GO:0006418

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v1533470.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi\|356534931\|ref\|XP_003536004.1\|	Domains G3DSA:1.10.1160.10 G3DSA:1.20.1050.10 G3DSA:2.40.240.10 G3DSA:3.40.50.620 G3DSA:3.90.800.10 IPR000924 IPR001412 IPR004526 IPR010987 IPR011035 IPR014729 IPR020056 IPR020058 IPR020059 IPR020061 NON_CYTOPLASMIC_DOMAIN PF00749 PF03950 PR00987 PS00178 PTHR11451 PTHR11451:SF37 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47616 SSF50715 SSF52374 SignalP-TM_GRAM_POSITIVE SignalP-noTM_GRAM_NEGATIVE TIGR00463 cd10289	33
LotjaGi5g1v0005200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate--tRNA ligase; TAIR: AT5G26710.1 Glutamyl/glutaminyl-tRNA synthetase, class Ic; Swiss-Prot: sp\|O82462\|SYEC_ARATH Glutamate--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|A0A0L9TZ06\|A0A0L9TZ06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0005200	Domains G3DSA:1.20.1050.130 G3DSA:2.40.240.10 G3DSA:3.40.50.620 IPR000924 IPR001412 IPR004046 IPR004526 IPR011035 IPR014729 IPR020056 IPR020058 IPR020059 IPR036282 MF_02076 PF00749 PF03950 PF14497 PR00987 PS00178 PTHR43097 PTHR43097:SF12 SSF47616 SSF50715 SSF52374 TIGR00463 cd10289 mobidb-lite	27
LotjaGi5g1v0235000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate--tRNA ligase; TAIR: AT5G26710.1 Glutamyl/glutaminyl-tRNA synthetase, class Ic; Swiss-Prot: sp\|O82462\|SYEC_ARATH Glutamate--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|A0A0L9TZ06\|A0A0L9TZ06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0235000	Domains G3DSA:1.20.1050.130 G3DSA:2.40.240.10 G3DSA:3.40.50.620 IPR000924 IPR001412 IPR004526 IPR011035 IPR014729 IPR020056 IPR020058 IPR020059 IPR036282 MF_02076 NON_CYTOPLASMIC_DOMAIN PF00749 PF03950 PR00987 PS00178 PTHR43097 PTHR43097:SF12 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47616 SSF50715 SSF52374 SignalP-TM SignalP-noTM TIGR00463 cd10289	31

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd10289	CDD	1	33.33