Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0235000 |
| Transcript ID | LotjaGi5g1v0235000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate--tRNA ligase; TAIR: AT5G26710.1 Glutamyl/glutaminyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O82462|SYEC_ARATH Glutamate--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A0L9TZ06|A0A0L9TZ06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0235000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54317761..54322296) extracted from Lotus japonicus Gifu genome v1.2.
CTCGATCCAGCAACCAAAAAAGCCCAATATATATTCTGCTCCTTTCCACTCAAACCCTTCCTCCCATTCTTGCTCGATTC ACCTTACCATGGACATCAAAACCCTTGCATTCGCCGCAGCTTCGCCACCGTTACCGGTAATCGCCGCCTTGAAGCTCGCC GGAGTCTCTCCCTCCGTTGACACCTCTCTCCCTCCTGACTCCGCTCCCGCATTTATCTTCTCCAATGGGTATAGTTCCAA TTTCTCATACTTCCAATTTCATTCATATGGTAATTCTTTGAATTTGGTTACTTTGTCTAGTTTGATGAAACCTTTTGAAG TAGAAATAGATGTTGTTTATGATCTTCGCGACTTTGCCGTAGCTGGTAAATGATTGTTAGAGTAACCATAGCTACTATAT CTGTTAATTGTTAATGAGTGCACTTACTTTGTAGGCTGAAATTGCATGGAACATCTGTTCTTCTACGGTACGTTGGGCGA GTTTCCGGTCTTGTTGATTTCTATGGGCAAAATGCATTTGAGACTGGCCAGGTGATTTTCCTGATTGAACATAACATCTA AAGTTTAAATCAGGGTTGTTAATGTCGGATAGCGTAGCGTAGCGGCAAGCCTAAAAAACACTATTTCAAGCGCTATAACG GACAATAGCGGTGAATAGTGGAGTAGCGGTGAACCCCGGGGTGCTACGCTATAGCGCTATTGTGTCGCTATAGCGGGCTA TTAACAAGCCTCGTTTAAATTGTCTTGCAAATTGCAATGACTTCTTTGGGTTGTGGTGATTTGCTTTAACTCACTCGGTT GTCTTTTCTCTGCATTGCTGCCTTCTACTTTTCAGATTGATGAATGGCTGGAATATGCTCCTGTCCTCTCATCAGGCCCT GCTTTTGAGAATGGATGCAAGTACATAGATGGGTACTTGGAGAAGCGTTCGTTTATTGTTGGTTATTCGTTATCAATTGC AGACCTAGCAATTTGGGCTGGTCTTGCAGGTAAAGGTTTTCGCGATACCCATTCGACTTCATTGGTTATCGTATTTGGTC TCCTGAAAAATTTGACATGCTAGGGGAAGTCCTTGTGTTTATCATTGCACTTTTGGTTATTTCTTTGTTGTATCCATGCT GAAAAAACTAGGTTAATTGTTGTCTTATCTTGGAACATATCTGACAATATATGCAAGATCTGAAAAAACTAGGTTTTCGT GTAGATTTATATTGTTTTTTAGAGTCTTAGACTGAGCAACTCTACTGTGGTTGGTCATCATATAATGTTGTGGGAGTGTG TGCAACAAAAATACTCTATTTTCAATTCCTCCATTCTTAGTGTTACTAGGTTCTTCAACCTATATTCTTGATGATCCAAT TTTATCGCGTACAGTCTTTATAAATGGTATGTATGTATGCTTTTTCAGGATCTGGAAAGAGATGGGAAAGTCTAAGGAAG TCAAAGAAATATTTGAATCTTGCACGATGGTTCAATTCAATAGTGACAGAACATGGCGCTACTTTAAACGAAGTTATAGC AACATATGTTAGCAAAAAAGGATTGGGAGAACCATCAGGAAGCAAGTCAAAAGATCAGTCAGCAGTCACTGATAAAGTGA AGAATGTGAATGGGGGTGTATCTGAAAACCTCAAAGGAGGAAACAAATCTATAGCTGAAATAGATCTTCCAGATGCTGAA GTTGGAAAAGTTTGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCACATTGGACACGCAAAAGCAGCTCTGTTGAA CAAATATTTTGCTGAGCGATACCAAGGGCAGTTAATATTGCGTTTTGATGATACCAATCCTGCTAAAGAAAGCAATGAGT TTGTTGACAGCTTGGTGAAAGATATTGATACGTTGGGTGTCAAATATAACCAAATCACTTATACATCAGATTACTTCCCT GAGCTGATGGAAATGGCTGAAAAATTAATTTGCCTGGGTAAAGCATATGTTGATGACACTCCACGTGATGACATGAAAGA GCAGCGAATGGACGGGACAGAATCTAAGTGCAGAAATAATAGCACAGAAGAGAATATGAAATTATGGATTGAGATGGTTG CAGGAACAGAAAGAGGGTTACAATGTTGTGTCCGTGGGAAGTTGGATATGCAGGACCCAAACAAATCACTTCGTGATCCT GTTTATTATCGTTGCAATCCAATTCCTCATCATAGAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCATG TCCATTTGTTGATGCTAGAGAAGGTATCACGCATGCCCTCCGATCTAGTGAGTACCATGATCGCAATGCTCAATATTACC GAATTCAAGAGGACATGGGACTTAGAAAAGTTCTCATCTATGAATTCAGCCGGTTGAATATGGTCTACACACTTCTGAGC AAACGAAAGCTTCTATGGTTTGTCCAAAATGGAAAAGTTGATGGATGGGATGATGCGCGATTTCCTACTGTGCAAGGGAT TGTACGCAGAGGCTTGAAAATTGAAGCACTAATACAGTTCATTGTTGAGCAGGTATGTAAAAGGCTTTGCTCTCAGTTAT ATATAAAAAAGAAAAGATGCATTCTCTTACAAATTAGAAACGATTCGGTAGAGTGTGGTAATCAGTTGTTGTGGTTTTTA TTCCTTGTCCATTCTTCATGTATTATTCACATGCTTGGAATTTTGATGACTCGTCCCTGATACTTGTACAGGGGGCATCA AAAAATCTCAATCTCATGGAATGGGACAAGCTCTGGACCATTAATAAGAAGATTATAGATCCTGTCTGTCCCAGACACAC TGCTGTTGTTGCAGACAGACGCGTGTTGTTGAACCTTATTGATGGTCCTGAGAAACCATTTGTCCACATCATACCTCGGC ACAAAAAACATAAAGATGCTGGGGATAAAGCTACAACATATACTAAAAGCATATGGATAGACCATGCTGATGCAGAGTCC ATATCTGCTGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATCGTGAAGGAAATAGAAAAGGACCAAGTTGGGAA TGTCACCAGGTTGAGTGGTGTTTTGCATCTTGAAGGATCTGTAAAGACCACAAAGTTGAAGCTCACTTGGCTACCTGACA TAGATGAACTAGTTAGCCTGACATTGGTGGAGTTTGATTATCTAATTACAAAGAAAAAGGTATGTGCTCGTCCACTTTAA TAAAGCCCATTGGTTTCAATGATTAGGAAATATGAATCCGTTAAGGGAAATATAGTAATTATCTGAACCCTGTTTTCTTT ATACATCACTTGTATCCTCTCTTCAGTTAAATCCTGTGCAGATCAGATGAATTTAGTAGTGATAATATTGAGCTCAAGCG TTTATACTTCTAAAAGTGTCCTATGAAAAACAGTTCTTTATTGAGTTTGCTGTCTTCCTCTCATAGACTGCATCTTCAAA GGATAAGCTGTCCTGTTTTGCTCGTAACATTTTTGGAAGAGTGGAATGATATCCAGATGATCTTTTTATTGTGTTTTCCA TATAATTATCTTGCTCTACGTCCAGTGTGGGTTAAAGCTAGATAGGATAAGAAACTAAACACCATCTTCCCCCCCTCCAA ATAAATAACTAAAAACCACCAATGCTTGACCATTTTAAGGTGTTTATATGCACTTGTGCCACTTCCAATAGATATTTGAA GAAATTATCAGTTCCTTGTACTAACTAGACTGATGCCATTATCTTGCACTGTCTTATCCTATCTTCCTTAATGAACTAAC TTGTAGTTCAGTGTTCTTTTCATTTCTTTCGATGAAAACTTCAATCCTGCCTGCTTCCCCGTGAAACTCAAATAAGTTGT TTTAGCATTGGGCCAATTTTATTTGCAATCATTGTCACATGCAATAGGATTGTATTATTGACAGTTTATTTTTTGGTTGC AGCTTGAAGAAAATGAGGAGTTCACTGATGTGCTTAACCCGTGTACGAAAAAAGAGACTCTAGCATATGGAGACTCCAAC ATGCGAAACCTTAAACAAGGAGAGATATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGCACCCTTCATTCGACC CTCAAAACCAATCGTGTTGTATGCCATCCCTGATGGCAGGCAGCAGACTTGTTTGAAGTAATAATCTTTTTATGTTCTTA AAATGCTCTAGAGCATCACCTACATTCATGCTCAGCAGAGTTTGTAATGGAGATGACAAGTTTGTGGAATTGTTTTCATG TTTACCTTCTTTATAAGCAAACTATTGTAATTGTGTTCATGACTAGAATTTGGGGAAGTCTTCTCTGTTTTTTGGACAAA TACTACTCAGTCTTTCACAGTAAAGCTGTATTAGTTTATTTTTTGCTCAAGTGGGTATCCCAGTTGGATAAAGATCATTT AAGTTAAAGTGATAACGAATTAATGATAGTAAACTGAATTATTAAAACAGGATTTCAGATACAGCTATAGCTGACTGTCA TGTATGGCTCTTTATTTTCTTGCTATCACATAAAAATAGTGTTGAGTAAGATTTAG
CDS sequence (LotjaGi5g1v0235000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATCAAAACCCTTGCATTCGCCGCAGCTTCGCCACCGTTACCGGTAATCGCCGCCTTGAAGCTCGCCGGAGTCTC TCCCTCCGTTGACACCTCTCTCCCTCCTGACTCCGCTCCCGCATTTATCTTCTCCAATGGGCTGAAATTGCATGGAACAT CTGTTCTTCTACGGTACGTTGGGCGAGTTTCCGGTCTTGTTGATTTCTATGGGCAAAATGCATTTGAGACTGGCCAGATT GATGAATGGCTGGAATATGCTCCTGTCCTCTCATCAGGCCCTGCTTTTGAGAATGGATGCAAGTACATAGATGGGTACTT GGAGAAGCGTTCGTTTATTGTTGGTTATTCGTTATCAATTGCAGACCTAGCAATTTGGGCTGGTCTTGCAGGATCTGGAA AGAGATGGGAAAGTCTAAGGAAGTCAAAGAAATATTTGAATCTTGCACGATGGTTCAATTCAATAGTGACAGAACATGGC GCTACTTTAAACGAAGTTATAGCAACATATGTTAGCAAAAAAGGATTGGGAGAACCATCAGGAAGCAAGTCAAAAGATCA GTCAGCAGTCACTGATAAAGTGAAGAATGTGAATGGGGGTGTATCTGAAAACCTCAAAGGAGGAAACAAATCTATAGCTG AAATAGATCTTCCAGATGCTGAAGTTGGAAAAGTTTGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCACATTGGA CACGCAAAAGCAGCTCTGTTGAACAAATATTTTGCTGAGCGATACCAAGGGCAGTTAATATTGCGTTTTGATGATACCAA TCCTGCTAAAGAAAGCAATGAGTTTGTTGACAGCTTGGTGAAAGATATTGATACGTTGGGTGTCAAATATAACCAAATCA CTTATACATCAGATTACTTCCCTGAGCTGATGGAAATGGCTGAAAAATTAATTTGCCTGGGTAAAGCATATGTTGATGAC ACTCCACGTGATGACATGAAAGAGCAGCGAATGGACGGGACAGAATCTAAGTGCAGAAATAATAGCACAGAAGAGAATAT GAAATTATGGATTGAGATGGTTGCAGGAACAGAAAGAGGGTTACAATGTTGTGTCCGTGGGAAGTTGGATATGCAGGACC CAAACAAATCACTTCGTGATCCTGTTTATTATCGTTGCAATCCAATTCCTCATCATAGAATTGGATCCAAGTATAAAGTG TATCCAACTTATGATTTTGCATGTCCATTTGTTGATGCTAGAGAAGGTATCACGCATGCCCTCCGATCTAGTGAGTACCA TGATCGCAATGCTCAATATTACCGAATTCAAGAGGACATGGGACTTAGAAAAGTTCTCATCTATGAATTCAGCCGGTTGA ATATGGTCTACACACTTCTGAGCAAACGAAAGCTTCTATGGTTTGTCCAAAATGGAAAAGTTGATGGATGGGATGATGCG CGATTTCCTACTGTGCAAGGGATTGTACGCAGAGGCTTGAAAATTGAAGCACTAATACAGTTCATTGTTGAGCAGGGGGC ATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTCTGGACCATTAATAAGAAGATTATAGATCCTGTCTGTCCCAGAC ACACTGCTGTTGTTGCAGACAGACGCGTGTTGTTGAACCTTATTGATGGTCCTGAGAAACCATTTGTCCACATCATACCT CGGCACAAAAAACATAAAGATGCTGGGGATAAAGCTACAACATATACTAAAAGCATATGGATAGACCATGCTGATGCAGA GTCCATATCTGCTGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATCGTGAAGGAAATAGAAAAGGACCAAGTTG GGAATGTCACCAGGTTGAGTGGTGTTTTGCATCTTGAAGGATCTGTAAAGACCACAAAGTTGAAGCTCACTTGGCTACCT GACATAGATGAACTAGTTAGCCTGACATTGGTGGAGTTTGATTATCTAATTACAAAGAAAAAGCTTGAAGAAAATGAGGA GTTCACTGATGTGCTTAACCCGTGTACGAAAAAAGAGACTCTAGCATATGGAGACTCCAACATGCGAAACCTTAAACAAG GAGAGATATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGCACCCTTCATTCGACCCTCAAAACCAATCGTGTTG TATGCCATCCCTGATGGCAGGCAGCAGACTTGTTTGAAGTAA
Protein sequence (LotjaGi5g1v0235000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIKTLAFAAASPPLPVIAALKLAGVSPSVDTSLPPDSAPAFIFSNGLKLHGTSVLLRYVGRVSGLVDFYGQNAFETGQI DEWLEYAPVLSSGPAFENGCKYIDGYLEKRSFIVGYSLSIADLAIWAGLAGSGKRWESLRKSKKYLNLARWFNSIVTEHG ATLNEVIATYVSKKGLGEPSGSKSKDQSAVTDKVKNVNGGVSENLKGGNKSIAEIDLPDAEVGKVCLRFAPEPSGYLHIG HAKAALLNKYFAERYQGQLILRFDDTNPAKESNEFVDSLVKDIDTLGVKYNQITYTSDYFPELMEMAEKLICLGKAYVDD TPRDDMKEQRMDGTESKCRNNSTEENMKLWIEMVAGTERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKV YPTYDFACPFVDAREGITHALRSSEYHDRNAQYYRIQEDMGLRKVLIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDA RFPTVQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVVADRRVLLNLIDGPEKPFVHIIP RHKKHKDAGDKATTYTKSIWIDHADAESISAGEEVTLMDWGNAIVKEIEKDQVGNVTRLSGVLHLEGSVKTTKLKLTWLP DIDELVSLTLVEFDYLITKKKLEENEEFTDVLNPCTKKETLAYGDSNMRNLKQGEILQLERKGYFRCDAPFIRPSKPIVL YAIPDGRQQTCLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Gene3D | 3 | 172 | 170 | 8.4E-40 | – | |
| PANTHER | 5 | 731 | 727 | 0.0 | – | |
| PANTHER | 5 | 731 | 727 | 0.0 | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 733 | 713 | - | – | |
| SUPERFAMILY | 55 | 156 | 102 | 3.69E-15 | ||
| Hamap | 66 | 722 | 657 | 31.974 | ||
| CDD | 76 | 155 | 80 | 1.51786E-25 | – | |
| Gene3D | 197 | 533 | 337 | 2.2E-121 | ||
| TIGRFAM | 202 | 709 | 508 | 2.7E-154 | ||
| Pfam | 224 | 528 | 305 | 3.4E-98 | ||
| SUPERFAMILY | 224 | 537 | 314 | 8.04E-84 | – | |
| PRINTS | 228 | 240 | 13 | 2.4E-19 | ||
| ProSitePatterns | 231 | 242 | 12 | - | ||
| PRINTS | 242 | 253 | 12 | 2.4E-19 | ||
| PRINTS | 257 | 270 | 14 | 2.4E-19 | ||
| PRINTS | 402 | 412 | 11 | 2.4E-19 | ||
| PRINTS | 418 | 426 | 9 | 2.4E-19 | ||
| SUPERFAMILY | 531 | 728 | 198 | 1.1E-47 | ||
| Pfam | 531 | 708 | 178 | 2.1E-35 | ||
| Gene3D | 534 | 718 | 185 | 4.7E-25 | ||
| Gene3D | 539 | 645 | 107 | 4.7E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Glutamate-tRNA ligase activity | Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Glutamyl-tRNA aminoacylation | The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. The glutamyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a glutamic acid-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi5g1v0235000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…