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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0005200 |
| Transcript ID | LotjaGi5g1v0005200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate--tRNA ligase; TAIR: AT5G26710.1 Glutamyl/glutaminyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O82462|SYEC_ARATH Glutamate--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A0L9TZ06|A0A0L9TZ06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0005200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1174800..1179089) extracted from Lotus japonicus Gifu genome v1.2.
CCTGCTAAGTTTTTTTTGGCCTTTTTTTTGTTATTTAGTTGTTCGCTCTCATTATCTGTCTTGCTCTTCTATTTTATTTT TTTTACATTAATTCATCTAAATCTTGTTTATTAATATTGGAGTATAAACAATAATAAGAAATGAACACCTAATGGTAAAA TTGGGATGGTTCTAAGTAAGAAAATAAGGGTGTCACTATTTCTACTCGGAAAAAAGAAAAGATGAGTGAAGATATTTTTT TTGAAATAGAGCAATTAATAGTTAATAGTTTTATAGTAAGGGTAATATAGGAAAAATAATAATAATAACTTGTACCACTC CGTCCATAACCCAAACAATTGAGTGGTAATTTTCCTCCGCTCCATCATAAAATACCCAAACAATGGAATAAGAAATTTAC TCCGTTCCATTCCACTCCATTCCGTTCCTTCGTGTTCCATTCCGCTCCGTTCCATTATGTTCCATCAATCCAAACATACC CGTAGTTGATGGTTTTTATTTTCATACAAAATCTCAAAAGTGAAAAGTGAAAAGTGAAAGAACGAGAAGCTTGACCTGCG TTTCTGCTCGGTTACCGGTGATCGCCGCCATGAAACTCGCCGGAATCTCACCCTTGATCGACGATGGGTATATTTCCAAT CTCTCCTCCCTCTAACAACTTCGTTTGCACTAGTAGATGACTGTCAGTCTGTCACTAGATTTATTCTATTCAATTTTAAC GCTTAGAATTGAATTTTTTAGGGTAGGACTGGGAATTTCAGAATCAAGCAAAACATACACTATGATTATTATGTTTATGA TGTGCTGTGAGTATCTAGTAGTATGTTATCAATTGTTAATGAATGCACTTACTTTGCAGGCTGAAATTGCATGGAACATT TGTTCAACAAAAAGGGCAAAATGCATTTGAAACTCGCCAGGTGATTTTTCTTCATGGAACCTAACATCTTTCTTGACGAA TGTACTCGAATATGATGAAAATTTGAAATAATTTATAGTCAAATGAATATGGTTGCCTTCTGTTTTTCAGATTGATGAAT GGCTAGAGTATGCTCATGTCCTCTCACAAGGCTCCGCTTTCGAGAATGGATGCAAATATATAGATGACTACTTGGACAAG CGTACATTTATTGTTGGTCATTCATTATCAACGGCAGACCTAGCAATCTGGGCAGGTCTTTCAGGTAAAGATTAGTGTTG GATTCGTTAACAATTTGACATGCAAAAGAAAATCCTTGTGTTTGTGATTGTGAATTGTGATTGCACTCTCTGGTTATTTC TTAGTTGTGTATCCATGCTGAAAAAACTAGGTTACTCGTTGTTCTTTCTCGATCATAGCGGACAATCTATGCAGGTTCCA CTGGGTTTAGTGTGTAGCTTTATTGTGCTGTTTCGACTGAGGAACTCTATTGTGGTTTCTTATCATATAATATTGTGGGA GTGTGTGCAATAAAAGTACTCTATCTTCCATTCCTCCATTCTTATAGTGTTATTAGGTTCTTCAACCTGTATTCTGTGAA ACTTGATGGTCCATTTTTATCGCCCTCAGTCGTTATAAATTCTATGTATGTCCCTCGGTCTATCTAAATTCTATGTATGT ATGCCTTTTCAGGATCTGGAAAGAGATGGGAAAGTCTAAGGAAGTCAAAGAAATATCCAAATCTTGCACGATGGTTCAAT TCATTAGTGACAGAACATGGTAGTACTTTAAACGAAGTTATGGAAACTTATGTTACGAAAATAGGACCGGGAGAGCTATC AGCAGGCAAGTCAAAAGACCAGTCAGCAGTCACTGATAAAGGAGGAAACAAATCTTCAGCGGAAATAGACCTTCCAGATG CTGAAATTGGAAAAGTTCGCTTGCGATTTGCGCCTGAACCCAGTGGCTATCTTCACATTGGACACTCTAAAGCTGCTCTG TTGAACAAATATTTTGCTGAGCGATACCACGGACAGCTTATCGTTCGTTTTGATGATACCAATCCTGCTAAAGAAAGCAA TGAGTTTGTGGATAACTTGGTGAAAGATATTGATACATTGGCTATCGAATATGCAGAAATTACCTATACATCAGATTACT TCCCTGAGTTGATGGAAATGGCTGAAAAATTAATTCGCCAGGGTAAAGCATATGTTGATGACACTCCACGTGTAGATATG AAAAAGCAGAGAAAGGATGGGAAAGAGTCTAAATGCAGAAACAATACCATAGAAGAAAATTTAACACTGTGGAACGCAAT GATCGCAGGCTCCGAGAGGGGCTTACAGTGTTGTCTCCGTGGGAAGTTGGATATGCAGGACCCAAACAAATCACTTCGTG ATCCTGTTTATTATCGTTGCAATCCAATTCCTCATCATAGAATTGGATCCAAGTATAAAGTCTATCCAACTTATGATTTT GCATGTCCATATGTTGATGCTAAAGAAGGTATCACACATGCCCTCCGATCTAGTGAGTACCATGATCGTAATGCTCAATA TTACCGAATTCAAGAGGACATGGGACTAAGAAAAGTTCTCATCTATGAATTCAGCCGGTTGAATTTGGTCTACACACTTC TGAGCAAACGAAAGCTTCTATGGTTTGTCCAAAATGGGAAAGTCGATGGATGGGATGATGCACGATTTCCTACCATTCAA GGGATTGTACGCAGAGGCTTGAAAATTGAAGCACTGATACAGTTTATTGTTGACCAGGTATGTAAAAGGCTTTGCACTCA TTTATATACAAAACAAAATAACATGCAAAAGATAAATTCTGACAAATTAGAAATGATACAGTAGAGTGTGCTATTCGATA GTTGTGGTTTTCTTTTTCCTTGTCCATTCTTCATGTATTATTCACATGCTTTAAATTTTGATGACTTATCCATGATACTT GTTCAGGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTCTGGACCATTAATAAGAAGATTATAGATCCTGT CTGTCCTAGACACACTGCTGTCATTGCAGACAGACGCGTGTTGTTGAACCTTACTGATGGTCCTGAGAAACCATTTGTCC ACATCATACCTCGGCACAAGAAACATAAAGACGCTGGGGATAAAGCTACAACATATACTAAAAGCATATGGATAGACCAT GCTGATGCAGAGTCCATATCAGCTGGTGAGGAAGTAACCTTGATGGATTGGGGTAATGCTGTCGTGAAGGAAATAGAAAA GGACCAAGATGGGAATGTCACCCGGTTGAATGGTGTTTTGCATCTTGAAGGATCTGTGAAGACTACAAAATTGAAGCTCA CTTGGCTACCTGACATAGATGAGCTAGTTAGCCTGACATTGGTGGAGTTTGATTATCTAATTACAAAGAAAAAGGTATGT TCTCTTCAACATTTATGAAGCATATTGGTTTCTACGATTAGGAAATATAAATCTGTTAAGGAAAATATAGTAATTATGTG AACTCTTTTTTGTTTATACCTCATTTGTATCTTCTCTTCGGTTGAATCCAGTGCAGTGATCAGATGAATTTAATAGTGAT AATATTGAGATCAAGATTACTACTTCTAAAAGTATCCTGTGAAAAGGCAGTGTTATTTTCATTATATTCCTTACCGAACT AACCCTTAGTTCAGTGTCATTTTCATTTCTTCCATGAAAACTTTAAGCCTGCCTGCTTCCCCTTGAAACTCAAATAAGTT GTTTTGGCATGGCCCCAATTTTATTTGCAATTATTAACTGTTTGTTTTTCGGTTATACAGCTCGAAAAAGGGGAGGGTTT TGAAACTGTGCTTAATCCATGTACGAAAAAGGAGACTCTTGCATATGGAGACTCCAACATGCGAAATCTTAAGCGGGGAG AGATATTGCAGCTGGAGAGAAAAGGATATTTCAGGTGTGATGCACCTTTCATTCGGCCCTCAAAACCAATCGTGTTGTTT GCAATCCCTGATGGCAGGCATCCAACATGTTTGAAGTAATCATCTTTTTTCTTCTTAAAATGCCTAGAGTTTAGAGCTTC ACCTGCATTCCTGCTCTAGTTGATACTTGCAAGCAGCCTGTCTCTGGGCAACAATCATTGTAGTTATATAGTAAGAGTGT AAATACAGATTCCGAATGGATAAACAGTGTAGTCAATCTGGCAACCTTTGCAAATTTGTCACATTTTTTTGACCCTATAT TACCAATTATAAATATATTTAGTGTCACTTGTATATAACAAGAATTCTTATCCTCATCCTTTGATTATTACAAGCACCAT TTTAGTCCTAGCTTGTAGTAAATACTGCCAATATTACAAATTTATTGGTC
CDS sequence (LotjaGi5g1v0005200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACTCGCCGGAATCTCACCCTTGATCGACGATGGGCTGAAATTGCATGGAACATTTGTTCAACAAAAAGGGCAAAA TGCATTTGAAACTCGCCAGATTGATGAATGGCTAGAGTATGCTCATGTCCTCTCACAAGGCTCCGCTTTCGAGAATGGAT GCAAATATATAGATGACTACTTGGACAAGCGTACATTTATTGTTGGTCATTCATTATCAACGGCAGACCTAGCAATCTGG GCAGGTCTTTCAGGATCTGGAAAGAGATGGGAAAGTCTAAGGAAGTCAAAGAAATATCCAAATCTTGCACGATGGTTCAA TTCATTAGTGACAGAACATGGTAGTACTTTAAACGAAGTTATGGAAACTTATGTTACGAAAATAGGACCGGGAGAGCTAT CAGCAGGCAAGTCAAAAGACCAGTCAGCAGTCACTGATAAAGGAGGAAACAAATCTTCAGCGGAAATAGACCTTCCAGAT GCTGAAATTGGAAAAGTTCGCTTGCGATTTGCGCCTGAACCCAGTGGCTATCTTCACATTGGACACTCTAAAGCTGCTCT GTTGAACAAATATTTTGCTGAGCGATACCACGGACAGCTTATCGTTCGTTTTGATGATACCAATCCTGCTAAAGAAAGCA ATGAGTTTGTGGATAACTTGGTGAAAGATATTGATACATTGGCTATCGAATATGCAGAAATTACCTATACATCAGATTAC TTCCCTGAGTTGATGGAAATGGCTGAAAAATTAATTCGCCAGGGTAAAGCATATGTTGATGACACTCCACGTGTAGATAT GAAAAAGCAGAGAAAGGATGGGAAAGAGTCTAAATGCAGAAACAATACCATAGAAGAAAATTTAACACTGTGGAACGCAA TGATCGCAGGCTCCGAGAGGGGCTTACAGTGTTGTCTCCGTGGGAAGTTGGATATGCAGGACCCAAACAAATCACTTCGT GATCCTGTTTATTATCGTTGCAATCCAATTCCTCATCATAGAATTGGATCCAAGTATAAAGTCTATCCAACTTATGATTT TGCATGTCCATATGTTGATGCTAAAGAAGGTATCACACATGCCCTCCGATCTAGTGAGTACCATGATCGTAATGCTCAAT ATTACCGAATTCAAGAGGACATGGGACTAAGAAAAGTTCTCATCTATGAATTCAGCCGGTTGAATTTGGTCTACACACTT CTGAGCAAACGAAAGCTTCTATGGTTTGTCCAAAATGGGAAAGTCGATGGATGGGATGATGCACGATTTCCTACCATTCA AGGGATTGTACGCAGAGGCTTGAAAATTGAAGCACTGATACAGTTTATTGTTGACCAGGGGGCATCAAAAAATCTCAATC TCATGGAATGGGACAAGCTCTGGACCATTAATAAGAAGATTATAGATCCTGTCTGTCCTAGACACACTGCTGTCATTGCA GACAGACGCGTGTTGTTGAACCTTACTGATGGTCCTGAGAAACCATTTGTCCACATCATACCTCGGCACAAGAAACATAA AGACGCTGGGGATAAAGCTACAACATATACTAAAAGCATATGGATAGACCATGCTGATGCAGAGTCCATATCAGCTGGTG AGGAAGTAACCTTGATGGATTGGGGTAATGCTGTCGTGAAGGAAATAGAAAAGGACCAAGATGGGAATGTCACCCGGTTG AATGGTGTTTTGCATCTTGAAGGATCTGTGAAGACTACAAAATTGAAGCTCACTTGGCTACCTGACATAGATGAGCTAGT TAGCCTGACATTGGTGGAGTTTGATTATCTAATTACAAAGAAAAAGCTCGAAAAAGGGGAGGGTTTTGAAACTGTGCTTA ATCCATGTACGAAAAAGGAGACTCTTGCATATGGAGACTCCAACATGCGAAATCTTAAGCGGGGAGAGATATTGCAGCTG GAGAGAAAAGGATATTTCAGGTGTGATGCACCTTTCATTCGGCCCTCAAAACCAATCGTGTTGTTTGCAATCCCTGATGG CAGGCATCCAACATGTTTGAAGTAA
Protein sequence (LotjaGi5g1v0005200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLAGISPLIDDGLKLHGTFVQQKGQNAFETRQIDEWLEYAHVLSQGSAFENGCKYIDDYLDKRTFIVGHSLSTADLAIW AGLSGSGKRWESLRKSKKYPNLARWFNSLVTEHGSTLNEVMETYVTKIGPGELSAGKSKDQSAVTDKGGNKSSAEIDLPD AEIGKVRLRFAPEPSGYLHIGHSKAALLNKYFAERYHGQLIVRFDDTNPAKESNEFVDNLVKDIDTLAIEYAEITYTSDY FPELMEMAEKLIRQGKAYVDDTPRVDMKKQRKDGKESKCRNNTIEENLTLWNAMIAGSERGLQCCLRGKLDMQDPNKSLR DPVYYRCNPIPHHRIGSKYKVYPTYDFACPYVDAKEGITHALRSSEYHDRNAQYYRIQEDMGLRKVLIYEFSRLNLVYTL LSKRKLLWFVQNGKVDGWDDARFPTIQGIVRRGLKIEALIQFIVDQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIA DRRVLLNLTDGPEKPFVHIIPRHKKHKDAGDKATTYTKSIWIDHADAESISAGEEVTLMDWGNAVVKEIEKDQDGNVTRL NGVLHLEGSVKTTKLKLTWLPDIDELVSLTLVEFDYLITKKKLEKGEGFETVLNPCTKKETLAYGDSNMRNLKRGEILQL ERKGYFRCDAPFIRPSKPIVLFAIPDGRHPTCLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 126 | 110 | 1.5E-28 | – | |
| PANTHER | 23 | 670 | 648 | 0.0 | – | |
| PANTHER | 23 | 670 | 648 | 0.0 | – | |
| SUPERFAMILY | 24 | 109 | 86 | 1.53E-14 | ||
| CDD | 30 | 109 | 80 | 1.08577E-25 | – | |
| Hamap | 33 | 663 | 631 | 31.604 | ||
| Pfam | 54 | 108 | 55 | 1.7E-4 | ||
| MobiDBLite | 132 | 153 | 22 | - | – | |
| Gene3D | 136 | 474 | 339 | 3.1E-121 | ||
| TIGRFAM | 139 | 650 | 512 | 1.6E-149 | ||
| Pfam | 165 | 469 | 305 | 8.6E-97 | ||
| SUPERFAMILY | 165 | 478 | 314 | 1.85E-83 | – | |
| PRINTS | 169 | 181 | 13 | 1.5E-18 | ||
| ProSitePatterns | 172 | 183 | 12 | - | ||
| PRINTS | 183 | 194 | 12 | 1.5E-18 | ||
| PRINTS | 198 | 211 | 14 | 1.5E-18 | ||
| PRINTS | 343 | 353 | 11 | 1.5E-18 | ||
| PRINTS | 359 | 367 | 9 | 1.5E-18 | ||
| Pfam | 472 | 649 | 178 | 1.9E-36 | ||
| SUPERFAMILY | 472 | 669 | 198 | 2.41E-48 | ||
| Gene3D | 475 | 659 | 185 | 2.0E-25 | ||
| Gene3D | 480 | 586 | 107 | 2.0E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Glutamate-tRNA ligase activity | Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Glutamyl-tRNA aminoacylation | The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. The glutamyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a glutamic acid-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi5g1v0005200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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