Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj5g3v1533470 |
| Transcript ID | Lj5g3v1533470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356534931|ref|XP_003536004.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 4 | 4 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 5 | 15 | 11 | – | – | |
| Phobius | 16 | 20 | 5 | – | – | |
| Phobius | 21 | 733 | 713 | – | – | |
| SUPERFAMILY | 55 | 156 | 102 | 2.27E-15 | ||
| CDD | 76 | 155 | 80 | 5.84E-25 | – | |
| Gene3D | 100 | 157 | 58 | 3.00E-07 | ||
| TIGRFAM | 202 | 709 | 508 | 1.90E-154 | ||
| PANTHER | 213 | 439 | 227 | 0 | – | |
| PANTHER | 213 | 439 | 227 | 0 | – | |
| Pfam | 224 | 528 | 305 | 3.10E-98 | ||
| Gene3D | 224 | 293 | 70 | 1.40E-35 | ||
| SUPERFAMILY | 224 | 537 | 314 | 8.04E-84 | – | |
| PRINTS | 228 | 240 | 13 | 2.40E-19 | ||
| ProSitePatterns | 231 | 242 | 12 | – | ||
| PRINTS | 242 | 253 | 12 | 2.40E-19 | ||
| PRINTS | 257 | 270 | 14 | 2.40E-19 | ||
| Gene3D | 297 | 401 | 105 | 3.40E-36 | – | |
| PRINTS | 402 | 412 | 11 | 2.40E-19 | ||
| Gene3D | 404 | 453 | 50 | 1.40E-35 | ||
| PRINTS | 418 | 426 | 9 | 2.40E-19 | ||
| Gene3D | 454 | 529 | 76 | 5.20E-28 | ||
| PANTHER | 458 | 730 | 273 | 0 | – | |
| PANTHER | 458 | 730 | 273 | 0 | – | |
| SUPERFAMILY | 531 | 728 | 198 | 1.83E-47 | ||
| Pfam | 531 | 708 | 178 | 1.60E-35 | ||
| Gene3D | 558 | 639 | 82 | 9.60E-12 | ||
| Gene3D | 640 | 727 | 88 | 7.70E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Glutamate-tRNA ligase activity | Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Glutamyl-tRNA aminoacylation | The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. The glutamyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a glutamic acid-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of Lj5g3v1533470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj5g3v1533470.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.