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cd01730

Source: CDD

Description

LSm3

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0000956
Biological process Nuclear-transcribed mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
Subterm of

Associated Lotus transcripts 3

Transcript Name Description Predicted domains Domain count
Lj0g3v0068179.1
– PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cicer arietinum] gi|502165822|ref|XP_004513701.1|
Domains
9
LotjaGi1g1v0598200.1
– Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|A0A0J8FV31|A0A0J8FV31_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0598200
Domains
11
LotjaGi2g1v0132800.1
– Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|Q5N9F1|Q5N9F1_ORYSJ protein; Found in the gene: LotjaGi2g1v0132800
Domains
11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd01730 CDD 1 33.33