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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0598200 |
| Transcript ID | LotjaGi1g1v0598200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|A0A0J8FV31|A0A0J8FV31_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0598200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113801273..113802775) extracted from Lotus japonicus Gifu genome v1.2.
GAGGCAACAATGGAGGAAGAAAGCGCGGTGAAGGAGCCTTTGGATCTCATTCGGCTCAGCCTCGACGAGCGTATCTACGT CAAGCTTCGTTCTGACAGAGAGCTTCGCGGCAAGCTTCATGTACGTACTTGTTTAATCTCTCTCTGTTAATTTCACCTTC TACACTCTTTTTCACCAACATTTACGGTTCGCAACTTGGTTTTAAGATAGATAAATCCTATACATGATGAGTTTATTGGA GTTTCCATTAACATGTTTTTCTTTCTATTCTCATCTTTGCAAAGCTCAAACAAATGGACATTCTTTGATGAAGAAGTGCT CAGGTACTTGCCGATCAAACATGTCAAAACTCAAAACTCTGTACCTAAGTCAGTGTTAGCGGATTTTTGGCTAATTGCTA CGCCGCTATTGCCCGCTATAGTGCTCTATTCCCGCTATTTCCGCTATTCGCCGCCAAATAGCAGCCGAAATAGCGGAATT TTGGCTCACCGCAGCCATGGTCCACGATCGCGATTTGATAACACTGGATAATACCATATATTTGACTGATCAATTGTCAA AGTATTATTCTCCTGTAAAATAAGCAAATGTTATTTTATAGAAAACATACAGTGTTTTGTATCTAGGTTGCATGAATGAT ATTTTGTTAAGGGAGAATTCTTTCAAAATTTCTGTATTGACTTCCTTTCTCTGCTCCTAAATAGGCACTTGGTGTTAATT TGATCTTTAAGATTTCATTGACTTGATGTGCTTTTTCCCCTATTTTCATTGGTGCTGTGGTTTCAATTTGAGTTTCAGGC TTATGATCAGCATCTCAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACTGTGGAAATCGATGATGAGACATATG AAGAAATTGTGAGGGTACGTTGTAATCAACGAAGATGTATATTCTTTTTCAGCAAAGCTAAATGGTAGAGTTGTGAATAA TTGCTTGAAAATTTGATCAATCATAGATTATAGCTTATAAGCATTAATGAGGGCAGCATCCATATACATACTCCTGCAGT CCTGTTTAGGAAGAGATGGTTATAGTTTATAAGTTGAAAGGTAGTTTAAGTAGAAAATTTGAATGAATGAAATTTGGTTG TGGAAACATCATTTGAAAATAACTAACACCTAAATGAAGTGCTCATAGATGAGAACCTGTAAAGTAAAAGCTAGATACTT CTGGGTAGTTTATAGATTAGATTATTTTCCATTTCTCGCACTATTGGTCTTATTATTTCAGATCTTGGATGTCAACAAAT GTAGGAAAATGCCAGATGCATATTTACTATCTTCAACCTGCATTAGCTAATCCACTTTGTCTTGTCTCACAAAGGAAAAT GCATGCTACTTTTGATTTGAAGATGCTTTTCCTTGAGTGATTTTTTCGTATTCTGATTTCAGACTACAAGGCGTACAGTT CCTTTCCTGTTTGTTAGAGGAGATGGGGTGATATTGGTTTCCCCACCACTGAGAACTGCATGA
CDS sequence (LotjaGi1g1v0598200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGAAAGCGCGGTGAAGGAGCCTTTGGATCTCATTCGGCTCAGCCTCGACGAGCGTATCTACGTCAAGCTTCG TTCTGACAGAGAGCTTCGCGGCAAGCTTCATGCTTATGATCAGCATCTCAATATGATTCTTGGTGATGTTGAAGAAATTG TTACTACTGTGGAAATCGATGATGAGACATATGAAGAAATTGTGAGGACTACAAGGCGTACAGTTCCTTTCCTGTTTGTT AGAGGAGATGGGGTGATATTGGTTTCCCCACCACTGAGAACTGCATGA
Protein sequence (LotjaGi1g1v0598200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFV RGDGVILVSPPLRTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 92 | 92 | 1.4E-31 | – | |
| PANTHER | 2 | 95 | 94 | 3.2E-61 | – | |
| PANTHER | 2 | 95 | 94 | 3.2E-61 | ||
| SUPERFAMILY | 9 | 91 | 83 | 2.52E-22 | ||
| CDD | 9 | 90 | 82 | 5.62158E-52 | ||
| SMART | 12 | 90 | 79 | 1.6E-19 | ||
| Pfam | 14 | 90 | 77 | 1.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Biological process | Nuclear-transcribed mRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0598200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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