Domain Predictions — View

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cd01805

Source: CDD

Description

RAD23_N

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3328650.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RAD23-like [Solanum tuberosum] gi\|77745475\|gb\|ABB02636.1\|	Domains G3DSA:1.10.10.540 G3DSA:1.10.8.10 G3DSA:3.10.20.90 IPR000626 IPR004806 IPR006636 IPR009060 IPR015360 IPR015940 IPR029071 PF00240 PF00627 PF09280 PR01839 PS50030 PS50053 PTHR10621 PTHR10621:SF12 SM00165 SM00213 SM00727 SSF101238 SSF46934 SSF54236 TIGR00601 cd01805 mobidb-lite	27
Lj2g3v1155470.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi\|508710184\|gb\|EOY02081.1\|	Domains G3DSA:1.10.10.540 G3DSA:1.10.8.10 G3DSA:3.10.20.90 IPR000626 IPR004806 IPR006636 IPR009060 IPR015360 IPR015940 IPR029071 PF00240 PF00627 PF09280 PR01839 PS50030 PS50053 PTHR10621 PTHR10621:SF12 SM00165 SM00213 SM00727 SSF101238 SSF46934 SSF54236 TIGR00601 cd01805 cd14379 cd14382 mobidb-lite	29
Lj5g3v2215070.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi\|508710184\|gb\|EOY02081.1\|	Domains G3DSA:1.10.10.540 G3DSA:1.10.8.10 G3DSA:3.10.20.90 IPR000626 IPR004806 IPR006636 IPR009060 IPR015360 IPR015940 IPR029071 PF00240 PF00627 PF09280 PR01839 PS50030 PS50053 PTHR10621 PTHR10621:SF12 SM00165 SM00213 SM00727 SSF101238 SSF46934 SSF54236 TIGR00601 cd01805 cd14379 cd14382 mobidb-lite	29
LotjaGi1g1v0550600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp\|Q84L30\|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr\|I3SBD5\|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600	Domains G3DSA:1.10.10.540 G3DSA:1.10.8.10 G3DSA:3.10.20.90 IPR000626 IPR004806 IPR006636 IPR009060 IPR015360 IPR015940 IPR029071 IPR036353 PF00240 PF00627 PF09280 PR01839 PS50030 PS50053 PTHR10621 PTHR10621:SF37 SM00165 SM00213 SM00727 SSF101238 SSF46934 SSF54236 TIGR00601 cd01805 mobidb-lite	28
LotjaGi2g1v0277900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp\|Q84L31\|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr\|A0A151RI27\|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900	Domains G3DSA:1.10.10.540 G3DSA:1.10.8.10 G3DSA:3.10.20.90 IPR000626 IPR004806 IPR006636 IPR009060 IPR015360 IPR015940 IPR029071 IPR036353 PF00240 PF00627 PF09280 PR01839 PS50030 PS50053 PTHR10621 PTHR10621:SF40 SM00165 SM00213 SM00727 SSF101238 SSF46934 SSF54236 TIGR00601 cd01805 cd14379 cd14382 mobidb-lite	30
LotjaGi3g1v0002300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp\|Q84L33\|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr\|A0A0S3SF25\|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300	Domains G3DSA:1.10.10.540 G3DSA:1.10.8.10 G3DSA:3.10.20.90 IPR000626 IPR004806 IPR006636 IPR009060 IPR015360 IPR015940 IPR029071 IPR036353 PF00240 PF00627 PF09280 PR01839 PS50030 PS50053 PTHR10621 PTHR10621:SF36 SM00165 SM00213 SM00727 SSF101238 SSF46934 SSF54236 TIGR00601 cd01805 mobidb-lite	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	16.67