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SSF101238

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003684
Molecular function Damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
Subterm of
GO:0006289
Biological process Nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
Subterm of
GO:0043161
Biological process Proteasome-mediated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
Subterm of

Associated Lotus transcripts 8

Transcript Name Description Predicted domains Domain count
Lj1g3v3328650.1
– RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1|
Domains
27
Lj2g3v1155470.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
Domains
29
Lj3g3v0707070.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
Domains
28
Lj5g3v2215070.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
Domains
29
LotjaGi1g1v0550600.1
– RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L30|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr|I3SBD5|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600
Domains
28
LotjaGi2g1v0277900.1
– RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A151RI27|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900
Domains
30
LotjaGi3g1v0002300.1
– Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L33|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr|A0A0S3SF25|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300
Domains
28
LotjaGi5g1v0340800.1
– RAD23 UV excision repair family protein; TAIR: AT3G02540.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A0L9U0N9|A0A0L9U0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0340800
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF46934 SUPERFAMILY 1 12.50