Domain Predictions — View

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cd03275

Source: CDD

Description

ABC_SMC1_euk

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v1695250.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 1-like isoform X1 [Cicer arietinum] gi\|502114983\|ref\|XP_004495097.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027417 PF02463 PF06470 PIRSF005719 PTHR18937 PTHR18937:SF177 SM00968 SSF52540 SSF75553 cd03275	15
Lj5g3v1073870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi\|356548057\|ref\|XP_003542420.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 PF02463 PF06470 PTHR18937 PTHR18937:SF177 SM00968 SSF52540 SSF75553 cd03275	13
Lj5g3v1073870.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi\|356548057\|ref\|XP_003542420.1\|	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 PF02463 PF06470 PTHR18937 PTHR18937:SF177 SM00968 SSF52540 SSF75553 cd03275 mobidb-lite	14
LotjaGi5g1v0181700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|A0A0S3SRB6\|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR028468 PF02463 PTHR18937 PTHR18937:SF12 SSF52540 SSF57997 cd03275 mobidb-lite	12
LotjaGi5g1v0181700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|A0A0S3SRB6\|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700	Domains Coil G3DSA:3.40.50.300 IPR003395 IPR027417 IPR028468 PF02463 PTHR18937 PTHR18937:SF12 SSF52540 SSF57997 cd03275 mobidb-lite	12
LotjaGi5g1v0181700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|A0A0B2P8J7\|A0A0B2P8J7_GLYSO Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR024704 IPR027417 IPR028468 IPR036277 PF02463 PF06470 PIRSF005719 PTHR18937 PTHR18937:SF12 SM00968 SSF52540 SSF57997 SSF75553 cd03275 mobidb-lite	21
LotjaGi5g1v0181700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|I1LYK3\|I1LYK3_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700	Domains Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR028468 IPR036277 PF02463 PF06470 PTHR18937 PTHR18937:SF12 SM00968 SSF52540 SSF75553 cd03275	17
LotjaGi5g1v0181700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q6Q1P4\|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr\|A0A0S3SR98\|A0A0S3SR98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.1060.20 G3DSA:3.30.70.1620 G3DSA:3.40.50.300 IPR003395 IPR010935 IPR027417 IPR028468 IPR036277 NON_CYTOPLASMIC_DOMAIN PF02463 PF06470 PTHR18937 PTHR18937:SF12 SM00968 SSF52540 SSF75553 TRANSMEMBRANE cd03275	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd03275	CDD	1	12.50