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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0181700 |
| Transcript ID | LotjaGi5g1v0181700.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SRB6|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:46287576..46292909) extracted from Lotus japonicus Gifu genome v1.2.
TTACGTTTTGAACTTAACTTGCGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGT TTGTGATGGTCTTGATGAGGCCAAAGATTTAAGCTGGAAAGGCGAGAGATTTAAAGGTAACAATGCCTTCCTTCTTTCTG TATCATTATACTGACATATGTCATTTGAATTTAAATGGGGTTACTTGGATGTCCCTTTTTGATCCCCTGTTTGTTTTTTC CTGTGGCTTGTTATGATTTCTTTCTGGGCGCTTAAATTTATCTTTTACATGACCAAATGATCTTTCCACCTTGAGTTTAT ATGTTGTTTTGTTGCTTATGTAACAAACTTTTTGACTTCTCTTAATTTAGTGTTTACTTTTAATGCATGTGATGCATTCC TAGTACCTTGTCAGAATGCATAATTTGTAAAATTTCCATATGTAATTTGGTCAGTTGTAACTGTGGATGGAATTCTGCTT ACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAATAAGTGGGATGACAAGAAAATTGA AGGTTTTTATCAATTTTTTTATTAATGTTTTTCTAATTTTGTTGAAAGTATTTTCTCTTGCAATAAACATAATATTTTTT CAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAGTTAGATGAGCTAGGATCAATCAGAGATATGCACCTTAAAGAG TCTGAAGCATCTGGAAAAATTAGTGGACTGGAGAAGAAAATTCAATATGCTGAGATTGAAAAGGTAAACTGTTAGGACCC AATTGCAAGGTATGGGACTTGAGTCCCACATTGGAAGTATGGGATTCTAATGTGGGGTTCATAAGGCCTTGGGCTCTCCA ACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCATAAACTCTTATGAGTTTAGCCATTTTTCTTGG CAATAATCAAAATTATCAGTTGATTGGGCGTGCAAGTTGCCAGCCTTAGAAGTTTTTATTTTTGATACTATCAAGCTTGC GATGCTTATTTCATTTTTTGATATGGTTTCATAATTCTCTTTTACACCATAGTTATCAATCCCTGTCCTCCCGGATAGCA GCTGACCCCAAAAACACTAAAGTGAGATAACTCCTATTCTATTTTTTTTACGGTAGAAATGATTTTTACTATATACCTAT AAATATTCAAATTAAAAGTGACTTAGAATCCATGACTTATTCATAATTACCAATAAAAATTAAGGTTGATTCTAGTAAAT AAGTTATAAGTTGAGGAAATAAACATACAACAGACTCACTATGAGATGATGAAAATATAAACCAGTCTCAGATTAGAGAG ACTAAATAATACACTTAGAACAGAAACTCAGAGATCTTCAACATGGACAAAATAAAATGGGAGGAAAGGGTTGTTAGTGC TGTAGCGGTCATACAGCCCCTGGCCTCCTAGTTGTAGCGTATCCGTAGCAGTGTAGTTAAGTATGAGATGTCAGACATAG TTATAGAAATTTGTTGTTGTTAGGATCCAATTGCAAGGTATTAGACTAAGGTCCACAGCAGAAGTATGAGATTCTAATTT GGGGTTTAAAGGCCTTAGGAATAGGATGTCCAAGAACAATGACTACTTTTATGGTATCGTTCCTCCAAGGTTCTTATCAA TTGAATCTTGATAATGCTTGAAAATGTACCTTTTGTGCATCTGTAGGTAGATAAGTACTAGTTTTGGCTGAGCATGGATG GGAGATTGGTGAATTTCTGTCTTCTGTTCCATATGGAATATTTTAATTTATTATTTTATGATTTACACTTTTGACTTTTT CCAGCGAAGCATTGAAGACAAACTTTCAAATTTGAACCAAGAAAAAGAGACCATGAAAAAACAAATTGAACGTATCACTC CAGACCTCCAGAAGGTGACATTGCCAATTCCCTTGTTCAGGCATAGTGGCATTATTGTATACCTAACTGGTTACTCGGTG TTTATGCTTTACAGTTAAATGGCACTGTTGACAAAAGGAATGCAGAATTGCGTAAGCTTGAGAAGAGAATTAATGAAATC ACTGATCGGATATACAAAGACTTTAGCAAGTCAGTTGGGGTTTCAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGA TGCTCAAAATGTAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTCTGTTCCTTCTTCCT TTTAATCTAAATCGTAGCTCCTTTTATATGTTTGGAAGTTTTCAATTATGTTGGATTATTGATAAATGTAAAAATCAAAG TAAAAGAAAGAAGGTATTTAGAGTTTTATTTGCACTCTAGTTGGTTATCCTTGAATTAGTTTCTGCATTCATCTATTAAT AACCTTAATTGAAATTGTTTTATAGGTTGGAGTATGAGCAAAATCGTGACATGAGTTCACGAATTCAAGAACTGGAATAT TCTCTTAGTGCTTTAGAGAATGACTTAAAACGGGTACAAAACAAAGAGGCTGAAGCAAAGTTAGCAGCTGAGAATGCTAC TGAAGAGATTGATCAGTTTAAGGATGAAGTTAAAGGTATATTTGGTACAACTTGTATGTGCTTTGTAATAATATAGAGAA CCACATCATATAATTGTTTTTTCTTTGAATTTTCTCTTTTTTATCCTTCCTCTTTGGTGCTACCGGGGTGAAGGTTTGGT TATCTGGGTACTGCTTTGCTGTTTAACATCTGAAATTGATGGGAACACAATTGGGTTGATCTTGAAAGAAGCAGATTGCA TACCCACCGTCACTTGATTTTGTTTATTTTTCTGCCTTGAGACTTGGGAGTCTTATGCTTTTCTATGTTCTCTTTCTACT CTTGTAGAGTGGAGATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAAGAATGGAAGAAGAAGGCTTCTTTATCCACAAC AAACTTATCCAAACTTAATCGTCTGATAAACTCCAAGGTTAGATGTTCAAAATTTCTTTTCTCGTGTTATTTCATTCATA ATGTATAGATTGCCAACACCTTTTTATATGTTTTTACAGGAGACACAGATTGATCAGTTGGTGGTGCAAAAGCAGGAAAT ATTAGAGAAGTGTGAACTGGAGCAGATTAGCCTTCCGACCATATCAGATTCTATGGATACTGGTAGCTCCACACCAGGTC CAGTTTTTGACTTTGATCAGCTCAGTAGGCCACTGAAAGATAGGAGACCCTCTGACAGGGATAAAATTGAGGTAGAATTT AAGCAAAAAATGGGTACGCTAATATCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAGTATGAGGCTCT GCTAGAAAAAGAAAGAGGTGTATTGGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAAGGAAAAAGCGGATAGATTCAATG CTGTTAAACAGAGGAGGTAAAAGTTATTTTTCTTCAATTCATCATTGCTTGTCTTATTTAAAATATCAGTTGTACTTGTA CATAGCCATTAGTTAGTGTGCATGGTTTAAGTGGACTCACAAAAGAGTCTTTATATAAAATTCACATTAGAAAACATGAA AAGAAACCCAAGACACCATATGGGTACAATATGACACTGATATGATGCGGATGCAGGGATATGGAAAATTCTTAAAAACT CCAGACTAGACCAGATCACATGTCTGATTAAAAATAATTCTGTCACATCGAATATGTTATGGAGGCTAGATACTTAATAT GATGCGAGTATGATTTGATGCGTATATATTCGCTGTAGTTACAATCGTGACTTGCCTCGTCATGATCTTATGATTTTTTG ATGTGCCCATCAGTCCAGATCCGAGCTTGGAACACAATTTGGTGAAATCAAGTTGGATTGATGAGATAAACCATGAATTC TGTTAGAAATATAATAGAAAATCATTCATGTGTCTTCACCCAATAGCTTAAGCTTTTTGGCTAGCTGGTTCATTACATGA TATCTGAGCCTCAATGACTAAAAGGTCTGAAGTTTGATACTTGTTTTACCGGTGCCTCCAAAAGTCTTTTCTGTACATGT CCATACCATGTTAACTGATTTCCCGTCAGCTTGTCATCGTTAAGTGTCACCCCAATATCTCCTCTTGTACAATCATTGCG TATCCTACCCTTTCTAGTGTGGTCTGGTCATTCATCCATCTTAATTCTTAACTTTATCATTTCTGCTGCTTCATTTTTTT TTTCTCATGTTGTCTGTTAAAGCCCAACATTCGCTACCATAGAGGATAGCCGGTCTTATAGTGATTCGGTCAATCTTTCT TTGAGCTCGGTCATAGATAAGTTCTTTAAGATTTTACTTCCCATCCCAAATATGACGTGTTCTTCTTAATTAACTTTATA TCTTCTAATGAATAGATAATATATTTGTTTAATGTATTTGGTGAGGTAGTAGTTTATATTGAGATACATGGCAGTTTACT TTTGTTGCATATCATGTCTTTTTGTGAAGCAAAAGTTTGTGTTGAATGCAGGTATGAGTTGTTCATGGATGCTTTCAACC ATATATCTGGTAATATAGATAAAATTTACAAACAGCTTACAAAGAGCCACACACATCCTCTGGGTGGAACAGCATACCTA AATTTGGAAAATGAAGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATAT GGATCAGCTATCTGGTGGGGAAAAGACTGTTGCTGCACTTGCGTTGCTATTCTCCATCCACAGGTAGATTTGTTTGTACT TGTAAAATTAATTCATCTCCTATATTCAAAAGGTGCATGTTTAGATATGTCTTAAGTTTTTTTTTTTTTGAAACTAATAT GGATCTTAAGTTTCTGAACCATTTTCTGAAACTTAGATTTGAGCATATATGTTCCATTAACATGGTCTCTGTTGCTTGTG GTTTCAGCTATAAGCCGTCGCCGTTTTTTATATTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTCGCTAAGGTT GCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAAGGGCTAGCCAGGATACTGATGGTGGAAGTGGTTTTCAAAGTATTGT GATTTCACTGAAAGACAGCTTTTATGACAAAGCTGAGGCGCTAGTTGGGGTCTACAGGGATTCTGATGGAGGGTAAATTT CTTCACATCATTAATTAATTTAACCTATTATCTTTTCCTTTTATTTTCCGTATATTGATGGCATATATCCTCCACTCTTA TGCAGTTGTTCGAAAACTCTCACGTTTGATCTAACTAACTATCGGGAGTCCTGA
CDS sequence (LotjaGi5g1v0181700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAATAAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAA GAAAGAGCAGTATGAATCAGAGTTAGATGAGCTAGGATCAATCAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAA AAATTAGTGGACTGGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGACAAACTTTCAAATTTGAAC CAAGAAAAAGAGACCATGAAAAAACAAATTGAACGTATCACTCCAGACCTCCAGAAGTTAAATGGCACTGTTGACAAAAG GAATGCAGAATTGCGTAAGCTTGAGAAGAGAATTAATGAAATCACTGATCGGATATACAAAGACTTTAGCAAGTCAGTTG GGGTTTCAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCAGAGGAGAGGCTGAACCTGAGT AGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGTGACATGAGTTCACGAATTCAAGAACTGGAATA TTCTCTTAGTGCTTTAGAGAATGACTTAAAACGGGTACAAAACAAAGAGGCTGAAGCAAAGTTAGCAGCTGAGAATGCTA CTGAAGAGATTGATCAGTTTAAGGATGAAGTTAAAGAGTGGAGATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAAGAA TGGAAGAAGAAGGCTTCTTTATCCACAACAAACTTATCCAAACTTAATCGTCTGATAAACTCCAAGGAGACACAGATTGA TCAGTTGGTGGTGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTGGAGCAGATTAGCCTTCCGACCATATCAGATTCTA TGGATACTGGTAGCTCCACACCAGGTCCAGTTTTTGACTTTGATCAGCTCAGTAGGCCACTGAAAGATAGGAGACCCTCT GACAGGGATAAAATTGAGGTAGAATTTAAGCAAAAAATGGGTACGCTAATATCTGAGATTGAAAGAACAGCACCAAATTT GAAGGCATTGGACCAGTATGAGGCTCTGCTAGAAAAAGAAAGAGGTGTATTGGAAGAGTTTGAAGCTGTCAGGAAAGAGG AGAAGGAAAAAGCGGATAGATTCAATGCTGTTAAACAGAGGAGGTATGAGTTGTTCATGGATGCTTTCAACCATATATCT GGTAATATAGATAAAATTTACAAACAGCTTACAAAGAGCCACACACATCCTCTGGGTGGAACAGCATACCTAAATTTGGA AAATGAAGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGATCAGC TATCTGGTGGGGAAAAGACTGTTGCTGCACTTGCGTTGCTATTCTCCATCCACAGCTATAAGCCGTCGCCGTTTTTTATA TTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTCGCTAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGG AAGGGCTAGCCAGGATACTGATGGTGGAAGTGGTTTTCAAAGTATTGTGATTTCACTGAAAGACAGCTTTTATGACAAAG CTGAGGCGCTAGTTGGGGTCTACAGGGATTCTGATGGAGGTTGTTCGAAAACTCTCACGTTTGATCTAACTAACTATCGG GAGTCCTGA
Protein sequence (LotjaGi5g1v0181700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGGTSGGMEARSNKWDDKKIEGLNKKKEQYESELDELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLN QEKETMKKQIERITPDLQKLNGTVDKRNAELRKLEKRINEITDRIYKDFSKSVGVSNIREYEENRLKDAQNVAEERLNLS SQLSKLKYQLEYEQNRDMSSRIQELEYSLSALENDLKRVQNKEAEAKLAAENATEEIDQFKDEVKEWRSKSEDCEKEIQE WKKKASLSTTNLSKLNRLINSKETQIDQLVVQKQEILEKCELEQISLPTISDSMDTGSSTPGPVFDFDQLSRPLKDRRPS DRDKIEVEFKQKMGTLISEIERTAPNLKALDQYEALLEKERGVLEEFEAVRKEEKEKADRFNAVKQRRYELFMDAFNHIS GNIDKIYKQLTKSHTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLFSIHSYKPSPFFI LDEVDAALDNLNVAKVAGFIRSKSCEGRASQDTDGGSGFQSIVISLKDSFYDKAEALVGVYRDSDGGCSKTLTFDLTNYR ES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 562 | 562 | 5.5E-220 | ||
| PANTHER | 1 | 562 | 562 | 5.5E-220 | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 12 | 32 | 21 | - | – | |
| Coils | 21 | 41 | 21 | - | – | |
| SUPERFAMILY | 44 | 268 | 225 | 7.85E-6 | – | |
| Coils | 55 | 92 | 38 | - | – | |
| Coils | 97 | 124 | 28 | - | – | |
| Coils | 175 | 244 | 70 | - | – | |
| Pfam | 193 | 545 | 353 | 4.9E-24 | ||
| SUPERFAMILY | 240 | 555 | 316 | 4.95E-33 | ||
| Coils | 252 | 279 | 28 | - | – | |
| MobiDBLite | 290 | 305 | 16 | - | – | |
| Gene3D | 290 | 561 | 272 | 2.8E-52 | – | |
| MobiDBLite | 290 | 322 | 33 | - | – | |
| Coils | 350 | 384 | 35 | - | – | |
| CDD | 442 | 556 | 115 | 7.64866E-64 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. | ||
| Biological process | Mitotic sister chromatid cohesion | The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission. | ||
| Cellular component | Cohesin complex | A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi5g1v0181700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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