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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1695250 |
| Transcript ID | Lj2g3v1695250.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: structural maintenance of chromosomes protein 1-like isoform X1 [Cicer arietinum] gi|502114983|ref|XP_004495097.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 0 | – | |
| PANTHER | 1 | 378 | 378 | 0 | – | |
| PIRSF | 8 | 1184 | 1177 | 1.10E-224 | ||
| Gene3D | 9 | 188 | 180 | 6.40E-38 | ||
| Pfam | 10 | 1172 | 1163 | 4.70E-56 | ||
| SUPERFAMILY | 10 | 220 | 211 | 8.40E-41 | ||
| CDD | 10 | 158 | 149 | 2.23E-72 | – | |
| Coils | 171 | 232 | 62 | – | – | |
| Coils | 238 | 286 | 49 | – | – | |
| Gene3D | 326 | 345 | 20 | 6.40E-38 | ||
| Coils | 326 | 363 | 38 | – | – | |
| PANTHER | 398 | 1187 | 790 | 0 | – | |
| PANTHER | 398 | 1187 | 790 | 0 | – | |
| Coils | 413 | 440 | 28 | – | – | |
| Coils | 455 | 503 | 49 | – | – | |
| SUPERFAMILY | 480 | 682 | 203 | 3.40E-50 | ||
| SMART | 518 | 634 | 117 | 5.10E-33 | ||
| Pfam | 518 | 632 | 115 | 6.10E-24 | ||
| Coils | 676 | 696 | 21 | – | – | |
| Coils | 717 | 744 | 28 | – | – | |
| Coils | 752 | 779 | 28 | – | – | |
| Coils | 830 | 938 | 109 | – | – | |
| SUPERFAMILY | 846 | 912 | 67 | 4.72E-30 | ||
| Gene3D | 875 | 928 | 54 | 7.50E-39 | ||
| Gene3D | 963 | 981 | 19 | 7.50E-39 | ||
| SUPERFAMILY | 977 | 1175 | 199 | 4.72E-30 | ||
| Coils | 988 | 1015 | 28 | – | – | |
| Gene3D | 1041 | 1181 | 141 | 7.50E-39 | ||
| SUPERFAMILY | 1079 | 1170 | 92 | 8.40E-41 | ||
| CDD | 1080 | 1186 | 107 | 1.04E-56 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
| Biological process | Chromosome organization | A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome. |
Expression pattern of Lj2g3v1695250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1695250.1, powered by CORGI.
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