Domain Predictions — View

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cd15543

Source: CDD

Description

PHD_RSF1

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v2017660.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase 5D [Medicago truncatula] gi\|357481617\|ref\|XP_003611094.1\|	Domains Coil G3DSA:1.10.150.60 G3DSA:3.30.40.10 IPR001606 IPR001965 IPR003347 IPR003349 IPR004198 IPR011011 IPR013083 IPR013637 IPR019786 IPR019787 PF00628 PF01388 PF02373 PF02375 PF02928 PF08429 PS01359 PS50016 PS51011 PS51183 PS51184 PTHR10694 PTHR10694:SF8 SM00249 SM00501 SM00545 SM00558 SM01014 SSF46774 SSF51197 SSF57903 cd15543	35
LotjaGi1g1v0317200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT5G09790.1 TRITHORAX-RELATED PROTEIN 5; Swiss-Prot: sp\|B9RU15\|ATXR5_RICCO Probable Histone-lysine N-methyltransferase ATXR5; TrEMBL-Plants: tr\|I1JY36\|I1JY36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0317200	Domains G3DSA:2.170.270.10 G3DSA:3.30.40.10 IPR001214 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 PF00628 PF00856 PS01359 PS50016 PS50280 PTHR10615 PTHR10615:SF178 SM00249 SSF57903 SSF82199 cd15543	19
LotjaGi2g1v0433900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp\|P29375\|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr\|K7LMP3\|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900	Domains Coil G3DSA:1.10.150.60 G3DSA:2.60.120.650 G3DSA:3.30.40.10 IPR001606 IPR001841 IPR001965 IPR003347 IPR003349 IPR004198 IPR011011 IPR013083 IPR013637 IPR019786 IPR019787 IPR036431 PF00628 PF01388 PF02373 PF02375 PF02928 PF08429 PS01359 PS50016 PS50089 PS51011 PS51183 PS51184 PTHR10694 PTHR10694:SF93 SM00249 SM00501 SM00545 SM00558 SM01014 SSF46774 SSF51197 SSF57903 cd15543 cd16100	40
LotjaGi2g1v0433900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp\|P29375\|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr\|K7LMP3\|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900	Domains Coil G3DSA:1.10.150.60 G3DSA:2.60.120.650 G3DSA:3.30.40.10 IPR001606 IPR001841 IPR001965 IPR003347 IPR003349 IPR004198 IPR011011 IPR013083 IPR013637 IPR019786 IPR019787 IPR036431 PF00628 PF01388 PF02373 PF02375 PF02928 PF08429 PS01359 PS50016 PS50089 PS51011 PS51183 PS51184 PTHR10694 PTHR10694:SF93 SM00249 SM00501 SM00545 SM00558 SM01014 SSF46774 SSF51197 SSF57903 cd15543 cd16100 mobidb-lite	41

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00