Domain Predictions — View

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PF02928

Source: Pfam

Description

C5HC2 zinc finger

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v4515430.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Cicer arietinum] gi\|502110041\|ref\|XP_004493785.1\|	Domains IPR003347 IPR003349 IPR004198 PF02373 PF02375 PF02928 PS51183 PS51184 PTHR10694 PTHR10694:SF53 SM00545 SM00558 SSF51197 mobidb-lite	14
Lj2g3v1509500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: lysine-specific demethylase 5C-like [Glycine max] gi\|356531447\|ref\|XP_003534289.1\|	Domains Coil IPR003347 IPR003349 IPR004198 PF02373 PF02375 PF02928 PS51183 PS51184 PTHR10694 PTHR10694:SF33 SM00545 SM00558 SSF51197 mobidb-lite	15
Lj2g3v2017660.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase 5D [Medicago truncatula] gi\|357481617\|ref\|XP_003611094.1\|	Domains Coil G3DSA:1.10.150.60 G3DSA:3.30.40.10 IPR001606 IPR001965 IPR003347 IPR003349 IPR004198 IPR011011 IPR013083 IPR013637 IPR019786 IPR019787 PF00628 PF01388 PF02373 PF02375 PF02928 PF08429 PS01359 PS50016 PS51011 PS51183 PS51184 PTHR10694 PTHR10694:SF8 SM00249 SM00501 SM00545 SM00558 SM01014 SSF46774 SSF51197 SSF57903 cd15543	35
Lj5g3v1265040.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi\|356574834\|ref\|XP_003555549.1\|	Domains IPR003347 IPR003349 IPR003888 IPR003889 IPR004198 PF02373 PF02375 PF02928 PF05964 PF05965 PS51183 PS51184 PS51542 PS51543 PTHR10694 PTHR10694:SF53 SM00541 SM00542 SM00545 SM00558 SSF51197 mobidb-lite	22
Lj6g3v1116100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi\|356532896\|ref\|XP_003535005.1\|	Domains IPR003347 IPR003888 IPR003889 IPR004198 PF02373 PF02928 PF05964 PF05965 PS51184 PS51542 PS51543 PTHR10694 PTHR10694:SF41 SM00541 SM00542 SM00558 SSF51197 mobidb-lite	18
LotjaGi1g1v0707900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase; TAIR: AT1G08620.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp\|Q53WJ1\|JM703_ORYSJ Lysine-specific demethylase JMJ703; TrEMBL-Plants: tr\|K7MYQ0\|K7MYQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0707900	Domains IPR003347 IPR003349 IPR004198 PF02373 PF02375 PF02928 PS51183 PS51184 PTHR10694 PTHR10694:SF54 SM00545 SM00558 SSF51197 mobidb-lite	14
LotjaGi2g1v0336400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp\|Q336N8\|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr\|A0A0B2RWY9\|A0A0B2RWY9_GLYSO Lysine-specific demethylase REF6; Found in the gene: LotjaGi2g1v0336400	Domains Coil G3DSA:2.60.120.650 IPR003347 IPR003349 IPR004198 PF02373 PF02375 PF02928 PS51183 PS51184 PTHR10694 PTHR10694:SF101 SM00545 SM00558 SSF51197 mobidb-lite	16
LotjaGi2g1v0433900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp\|P29375\|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr\|K7LMP3\|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900	Domains Coil G3DSA:1.10.150.60 G3DSA:2.60.120.650 G3DSA:3.30.40.10 IPR001606 IPR001841 IPR001965 IPR003347 IPR003349 IPR004198 IPR011011 IPR013083 IPR013637 IPR019786 IPR019787 IPR036431 PF00628 PF01388 PF02373 PF02375 PF02928 PF08429 PS01359 PS50016 PS50089 PS51011 PS51183 PS51184 PTHR10694 PTHR10694:SF93 SM00249 SM00501 SM00545 SM00558 SM01014 SSF46774 SSF51197 SSF57903 cd15543 cd16100	40
LotjaGi2g1v0433900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp\|P29375\|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr\|K7LMP3\|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900	Domains Coil G3DSA:1.10.150.60 G3DSA:2.60.120.650 G3DSA:3.30.40.10 IPR001606 IPR001841 IPR001965 IPR003347 IPR003349 IPR004198 IPR011011 IPR013083 IPR013637 IPR019786 IPR019787 IPR036431 PF00628 PF01388 PF02373 PF02375 PF02928 PF08429 PS01359 PS50016 PS50089 PS51011 PS51183 PS51184 PTHR10694 PTHR10694:SF93 SM00249 SM00501 SM00545 SM00558 SM01014 SSF46774 SSF51197 SSF57903 cd15543 cd16100 mobidb-lite	41
LotjaGi5g1v0201800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase; TAIR: AT1G08620.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp\|C0SUT9\|JMJ16_ARATH Putative lysine-specific demethylase JMJ16; TrEMBL-Plants: tr\|K7N4Y4\|K7N4Y4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0201800	Domains G3DSA:3.30.160.360 IPR003347 IPR003349 IPR003888 IPR003889 IPR004198 PF02373 PF02375 PF02928 PF05964 PF05965 PS51183 PS51184 PS51542 PS51543 PTHR10694 PTHR10694:SF98 SM00541 SM00542 SM00545 SM00558 SSF51197 mobidb-lite	23
LotjaGi6g1v0214500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lysine-specific demethylase; TAIR: AT4G20400.1 JUMONJI 14; Swiss-Prot: sp\|Q8GUI6\|JMJ14_ARATH Probable lysine-specific demethylase JMJ14; TrEMBL-Plants: tr\|K7LCJ5\|K7LCJ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0214500	Domains Coil G3DSA:2.60.120.650 G3DSA:3.30.160.360 IPR003347 IPR003349 IPR003888 IPR003889 IPR004198 PF02373 PF02375 PF02928 PF05964 PF05965 PS51183 PS51184 PS51542 PS51543 PTHR10694 PTHR10694:SF96 SM00541 SM00542 SM00545 SM00558 SSF51197 mobidb-lite	25

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	9.09